Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a13
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 28 3.2
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 27 5.6
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 27 7.4
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 27 7.4
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977... 27 7.4
12_01_0355 - 2704909-2705745 27 9.8
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 27 9.8
01_01_0861 + 6710815-6713142 27 9.8
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 125 RCVWSTASKFCDIRVYCL 178
RC WSTAS+ CD+ V L
Sbjct: 337 RCSWSTASRGCDVVVSAL 354
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -2
Query: 225 QHGRAAH*TAVRNNNRRQYTRMSQNFDAVLHTQRLQSVPRRISQLPVV*RRYNSQDA 55
Q RA H TA + ++Q R H Q+LQ V +++ V + +QD+
Sbjct: 453 QATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDS 509
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 19 RISFSCSWPSSPRILTIVSSSNNWQLANPSRHRLQSLCVEHG 144
+I+FS ++P P L I +N +L +PS L C EHG
Sbjct: 422 KINFS-AFPGHPSDLFIELVANISRLNHPSLSELVGYCSEHG 462
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 135 GARRQSFVTFVCIAFDYYFGRRFNERHARVVKNRNRITHLFMVHIYQVYIRVHYC 299
GA+++ I D + G+R E + V R+ + I++ Y R+H C
Sbjct: 301 GAQQKLIECEQVILNDPFLGKRIEEGNFVTVPLRDEFLENARLFIFETYCRIHRC 355
>03_06_0505 -
34397054-34397087,34397127-34397474,34397650-34397757,
34397847-34398161,34399027-34399442,34399531-34400946
Length = 878
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +1
Query: 256 SWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPS 366
SWC + + I ++ R+ +++ KC+ + + PS
Sbjct: 128 SWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPS 164
>12_01_0355 - 2704909-2705745
Length = 278
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -3
Query: 137 STHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGE 9
S+ S LC EGL D D +VK DG + IR GE
Sbjct: 116 SSESSLLLCTEGLGTESTVDADDMVK----DGDGDGEAIRRGE 154
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 135 GARRQSFVTFVCIAFDYYFGRRFNERHARVVKNRNRITHLFMVHIYQVYIRVHYC 299
GA+++ I D + G+R E ++ V R+ + I++ Y R+H C
Sbjct: 292 GAQQKLIECEQVILNDPFLGKRIEEGNSITVPLRDEFLENARLLIFESYCRIHRC 346
>01_01_0861 + 6710815-6713142
Length = 775
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 116 DCNRCVWSTASKFCDIRVYC 175
DC +WS +CD YC
Sbjct: 275 DCGSVLWSAPENWCDFDSYC 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,849
Number of Sequences: 37544
Number of extensions: 220057
Number of successful extensions: 518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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