Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25a13
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical
           protein F54F7.6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 268 SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFVV 396
           ++ FT + T  ++ R  N++  +CI+ + E P  F  +  FVV
Sbjct: 48  TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89


>U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical
           protein C24H10.2 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 195 RRFNERHARVVKNRNRITHLF 257
           RRFN   ARV K+RN+ + +F
Sbjct: 46  RRFNSNQARVEKDRNQASMIF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,513,411
Number of Sequences: 27780
Number of extensions: 212603
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)