Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25a08
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 363 CTCSNGAEPASLLWDLYRH 419
           CT S G  P ++ W L  H
Sbjct: 625 CTVSKGDYPLNISWTLNGH 643


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 334 YPSAEVVALGDFNAHHQEWL 275
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 334 YPSAEVVALGDFNAHHQEWL 275
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 334 YPSAEVVALGDFNAHHQEWL 275
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 334 YPSAEVVALGDFNAHHQEWL 275
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 354  PTACLSSTHLRRWWLLETSTLTT 286
            P+   SST    WW   T+  TT
Sbjct: 1039 PSTWWSSTTTSPWWTTTTTRRTT 1061


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,344
Number of Sequences: 336
Number of extensions: 3556
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)