Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a08
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 31 0.19
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 29 0.59
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 28 1.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 27 3.1
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.2
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 4.2
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 7.3
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 9.6
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 9.6
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 9.6
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 25 9.6
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 25 9.6
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 30.7 bits (66), Expect = 0.19
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Frame = +2
Query: 224 QGEVVGSPTREVSGSGP--QPLLVVSVEVSKSHHLRRWVLLKHAVGPLLHMLKRS*TCIT 397
Q E G+ ++ + P QP ++ + HH +AV P S T T
Sbjct: 88 QQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPT------SPTSPT 141
Query: 398 AVGPVQARVDSATAPVIYAQPQEGQVPLFEAPKTATADVSPDE 526
+ GP+ + DSA+ PQ+ Q P+ P +A + PD+
Sbjct: 142 SSGPIGSNFDSASEHNGPVYPQDQQGPVI-IPNSAISSTDPDD 183
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 424 HACLYRSHSSDAGSAPFEHVQEGTNRVLEQYPSAEVVALGDFNAHHQEWLGSRTT 260
++CL+R+ S G +P+E + N+VL LG + + W+ T+
Sbjct: 144 NSCLFRALSKPLGFSPYELREIVANQVLSNPDIYSTAILGKPSIEYASWIRKETS 198
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 356 PLLHMLKRS*TCITAVGPVQARVDSATAPVIYAQPQEGQVPLFEAPKTATADVSPDECAH 535
P + K+ T IT + P+ VD + ++G L T A D+CAH
Sbjct: 411 PSVRPSKKDPTGITCIVPMATHVDQTEHDLDILVTEQGLADLRGLSPTERAREVIDKCAH 470
Query: 536 PGF 544
P +
Sbjct: 471 PDY 473
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 643 PALLFLTETQTPAPDDTSYLEYPGH 569
P++LF T+ DD S+L + GH
Sbjct: 131 PSILFPTDVPCSLDDDVSFLTFKGH 155
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 304 LQEPPPPQMGTAQARGWSPLAH 369
L PPPP T R ++PL+H
Sbjct: 19 LLNPPPPSSSTRSGRLFAPLSH 40
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/77 (20%), Positives = 34/77 (44%)
Frame = -1
Query: 265 TTDLPGRTAYDLALAHGLSQLVTQPTRVPDIEGHEPSXXXXXXXXDPAGYSAVVDAPLGS 86
+ D P RT YD H +++ ++Q + D + + + P ++ AP S
Sbjct: 381 SADFPHRTVYDPLPTHAIAESISQENVIEDDDDDDDAWVSVDEAESP-HFTKRSPAPYLS 439
Query: 85 SDHRPTRAAVPLSRPDR 35
R + ++ LS+ ++
Sbjct: 440 KSFRNSALSLLLSQDEK 456
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 120 DTVRWSTLRLDRLITAPPVLPFHSLVPIV 34
DT +W+TL + +I APP P V ++
Sbjct: 191 DTQKWTTLEHNGVIFAPPYEPLPKNVKLI 219
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 424 HACLYRSHSSD---AGSAPFEHVQEGTNRVLEQYPSAEVVAL 308
++ LY +HS + GS + ++ GT+ V +P+A V AL
Sbjct: 192 YSYLYENHSVNLQIGGSDQWGNITAGTDLVRRTHPNANVYAL 233
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 88 SSDHRPTRAAVPLSRPDRRTT 26
SSD+RP +P RPD+ T+
Sbjct: 5 SSDYRPNHIFLPKFRPDKITS 25
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 592 SYLEYPGHVLEHNFLRKAG-VCAFVRAD 512
++L + GH+L H++ K G C F R +
Sbjct: 21 THLAFKGHLLSHDYRGKNGPACLFKRVE 48
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 191 HPCPRYRGARAFFVGPSADHRSGRIQCGG 105
HP + + FVGPS H S +QC G
Sbjct: 377 HPDSKSEASEVVFVGPSLAHLS--LQCRG 403
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 628 LTETQTPAPDDTSYLEYPGHVLEHNFLRKAGVC 530
LTE +P P+D L Y ++ N + A C
Sbjct: 246 LTEVPSPFPEDLHALAYTYYIRSRNMRQGAARC 278
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 537 GCAHSSGLTSAVAVFGASNNGTCPSCGCA-*ITGAVAESTRACTGP 403
GC + L +A G+ +G C C A +TG + R C P
Sbjct: 103 GCGRRNQLARRLAFLGSFGDGDCDGCNEAFTVTGPIT-YFRTCPDP 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,816
Number of Sequences: 5004
Number of extensions: 57153
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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