Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a08
(658 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117238-1|AAI17239.1| 676|Homo sapiens LIM domains containing ... 31 2.7
BC117236-1|AAI17237.1| 676|Homo sapiens LIM domains containing ... 31 2.7
BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongatio... 31 2.7
BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein. 31 2.7
AJ312686-1|CAC35917.1| 503|Homo sapiens LIM domains containing ... 31 2.7
AJ132408-1|CAB63652.1| 676|Homo sapiens LIM domains containing ... 31 2.7
AB208931-1|BAD92168.1| 295|Homo sapiens solute carrier family 2... 31 2.7
AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongatio... 31 2.7
Y14441-1|CAA74793.1| 781|Homo sapiens Marenostrin protein protein. 31 4.8
BC101537-1|AAI01538.1| 781|Homo sapiens Mediterranean fever pro... 31 4.8
BC101511-1|AAI01512.1| 781|Homo sapiens Mediterranean fever pro... 31 4.8
BC029926-1|AAH29926.1| 668|Homo sapiens SYDE1 protein protein. 31 4.8
AK123686-1|BAC85676.1| 735|Homo sapiens protein ( Homo sapiens ... 31 4.8
AJ003147-5|CAA05906.1| 781|Homo sapiens marenostrin protein. 31 4.8
AF111163-1|AAD26152.1| 781|Homo sapiens pyrin protein. 31 4.8
AF018080-1|AAB70557.1| 781|Homo sapiens PYRIN protein. 31 4.8
AC004794-2|AAC18917.1| 512|Homo sapiens F02569_2 protein. 31 4.8
U17034-1|AAC50163.1| 1326|Homo sapiens protein ( Human soluble P... 30 8.3
U17033-1|AAA70110.1| 1465|Homo sapiens 180 kDa transmembrane PLA... 30 8.3
AC080166-1|AAY24052.1| 968|Homo sapiens unknown protein. 30 8.3
>BC117238-1|AAI17239.1| 676|Homo sapiens LIM domains containing 1
protein.
Length = 676
Score = 31.5 bits (68), Expect = 2.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 398 AVGPVQARVDSATAPVIYAQPQEGQVP 478
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>BC117236-1|AAI17237.1| 676|Homo sapiens LIM domains containing 1
protein.
Length = 676
Score = 31.5 bits (68), Expect = 2.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 398 AVGPVQARVDSATAPVIYAQPQEGQVP 478
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongation
factor B polypeptide 3C (elongin A3) protein.
Length = 546
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +1
Query: 475 PVVRGPEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRAAPS 654
P+ GPE G QPGR +A P+ G+G QG S S K+ R A +
Sbjct: 179 PMPEGPEPAVPGEQPGR---GHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASA 235
Query: 655 Q 657
Q
Sbjct: 236 Q 236
>BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein.
Length = 544
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +1
Query: 475 PVVRGPEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRAAPS 654
P+ GPE G QPGR +A P+ G+G QG S S K+ R A +
Sbjct: 177 PMPEGPEPAVPGEQPGR---GHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASA 233
Query: 655 Q 657
Q
Sbjct: 234 Q 234
>AJ312686-1|CAC35917.1| 503|Homo sapiens LIM domains containing 1
protein.
Length = 503
Score = 31.5 bits (68), Expect = 2.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 398 AVGPVQARVDSATAPVIYAQPQEGQVP 478
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>AJ132408-1|CAB63652.1| 676|Homo sapiens LIM domains containing
protein 1 protein.
Length = 676
Score = 31.5 bits (68), Expect = 2.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 398 AVGPVQARVDSATAPVIYAQPQEGQVP 478
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>AB208931-1|BAD92168.1| 295|Homo sapiens solute carrier family 27
(fatty acid transporter), member 5 variant protein.
Length = 295
Score = 31.5 bits (68), Expect = 2.7
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Frame = +3
Query: 99 ASTTALYPAGSVVSRRSNKEGSCPSISGTRVGCVTSWERPWAR----ARS*AVRPGRSVV 266
AS A P +V C + ++GC T+W P R A S R +V
Sbjct: 172 ASLCAGEPTALLVLASQAVPALCMWLGLAKLGCPTAWINPHGRGMPLAHSVLSSGARVLV 231
Query: 267 LDPNHSWW*A--LKSPRATTSADGYCSSTR--LVPSCTCS 374
+DP + K RA T G+C + LVP+C S
Sbjct: 232 VDPGEGLGASGEWKGARAGTIGQGFCWDWQRPLVPTCLLS 271
>AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongation
factor Elongin A3 protein.
Length = 546
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +1
Query: 475 PVVRGPEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRAAPS 654
P+ GPE G QPGR +A P+ G+G QG S S K+ R A +
Sbjct: 179 PMPEGPEPAVPGEQPGR---GHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASA 235
Query: 655 Q 657
Q
Sbjct: 236 Q 236
>Y14441-1|CAA74793.1| 781|Homo sapiens Marenostrin protein protein.
Length = 781
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 490 PEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRA 645
PE +GR P +PR +A P+ G ++ PE VS P R+
Sbjct: 298 PEHSVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQASGSRS 349
>BC101537-1|AAI01538.1| 781|Homo sapiens Mediterranean fever
protein.
Length = 781
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 490 PEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRA 645
PE +GR P +PR +A P+ G ++ PE VS P R+
Sbjct: 298 PEHSVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQASGSRS 349
>BC101511-1|AAI01512.1| 781|Homo sapiens Mediterranean fever
protein.
Length = 781
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 490 PEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRA 645
PE +GR P +PR +A P+ G ++ PE VS P R+
Sbjct: 298 PEHSVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQASGSRS 349
>BC029926-1|AAH29926.1| 668|Homo sapiens SYDE1 protein protein.
Length = 668
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 247 DPGGQWFWTPTTLGGER*SLQEPPPPQMGTAQARGWSP 360
+P G+ ++ P R EPP PQ G+A++ G +P
Sbjct: 38 EPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAP 75
>AK123686-1|BAC85676.1| 735|Homo sapiens protein ( Homo sapiens
cDNA FLJ41692 fis, clone HCHON2000028, highly similar
to Homo sapiens 7h3 protein mRNA. ).
Length = 735
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 247 DPGGQWFWTPTTLGGER*SLQEPPPPQMGTAQARGWSP 360
+P G+ ++ P R EPP PQ G+A++ G +P
Sbjct: 105 EPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAP 142
>AJ003147-5|CAA05906.1| 781|Homo sapiens marenostrin protein.
Length = 781
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 490 PEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRA 645
PE +GR P +PR +A P+ G ++ PE VS P R+
Sbjct: 298 PEHSVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQASGSRS 349
>AF111163-1|AAD26152.1| 781|Homo sapiens pyrin protein.
Length = 781
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 490 PEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRA 645
PE +GR P +PR +A P+ G ++ PE VS P R+
Sbjct: 298 PEHSVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQASGSRS 349
>AF018080-1|AAB70557.1| 781|Homo sapiens PYRIN protein.
Length = 781
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 490 PEDGDSGRQPGRMRTPRLYAGSCAPIRGRGIQGMRCRPERVSASPLKKAGRA 645
PE +GR P +PR +A P+ G ++ PE VS P R+
Sbjct: 298 PEHSVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQASGSRS 349
>AC004794-2|AAC18917.1| 512|Homo sapiens F02569_2 protein.
Length = 512
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 247 DPGGQWFWTPTTLGGER*SLQEPPPPQMGTAQARGWSP 360
+P G+ ++ P R EPP PQ G+A++ G +P
Sbjct: 105 EPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAP 142
>U17034-1|AAC50163.1| 1326|Homo sapiens protein ( Human soluble PLA2
receptor mRNA, complete cds. ).
Length = 1326
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 66 RVGR*SDDPSGASTTALYPAGSVVSRRSNKEGSCPSISGTRVGCVTSWER 215
R GR DD +TT+ Y R K G CP + VGC T WE+
Sbjct: 196 REGR-EDDLLWCATTSRY-------ERDEKWGFCPDPTSAEVGCDTIWEK 237
>U17033-1|AAA70110.1| 1465|Homo sapiens 180 kDa transmembrane PLA2
receptor precursor protein.
Length = 1465
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 66 RVGR*SDDPSGASTTALYPAGSVVSRRSNKEGSCPSISGTRVGCVTSWER 215
R GR DD +TT+ Y R K G CP + VGC T WE+
Sbjct: 196 REGR-EDDLLWCATTSRY-------ERDEKWGFCPDPTSAEVGCDTIWEK 237
>AC080166-1|AAY24052.1| 968|Homo sapiens unknown protein.
Length = 968
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 66 RVGR*SDDPSGASTTALYPAGSVVSRRSNKEGSCPSISGTRVGCVTSWER 215
R GR DD +TT+ Y R K G CP + VGC T WE+
Sbjct: 194 REGR-EDDLLWCATTSRY-------ERDEKWGFCPDPTSAEVGCDTIWEK 235
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,721,781
Number of Sequences: 237096
Number of extensions: 2838082
Number of successful extensions: 8604
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8589
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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