Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25a08
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040642-4|AAN73873.2|  319|Caenorhabditis elegans Hypothetical ...    30   1.3  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p...    29   2.9  
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor...    29   2.9  
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase...    29   2.9  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.7  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     28   6.7  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     28   6.7  
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    27   8.9  

>AF040642-4|AAN73873.2|  319|Caenorhabditis elegans Hypothetical
           protein C50D2.8 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 16  DARSSFDDRDERVERQHGWGGDQTIQAERR 105
           D+R S D RD R  R HG+  D+    +RR
Sbjct: 289 DSRDSRDSRDRREHRHHGYDRDRRHHRDRR 318


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
 Frame = +3

Query: 9    TLRCPVVVRRSGRESGTAARVGR*SDDPSGASTTALYPAGSVVSRRSNKEGSCPSISG-T 185
            T+   V V  S    G+ A  G  S  P  +S+T    AGS   + +    S PS +G T
Sbjct: 1465 TIGTTVTVPPSSSSIGSTAPQGSSSIQPIASSSTMGSTAGSSSPQPTVSSTSVPSSTGAT 1524

Query: 186  RVGCVTSWERPWARARS*AVRPGRSVVLDPNHSWW*ALKSPRATTSADGYCSSTRLVPSC 365
              G  T+       A   +V    S  +    S    + +P  ++S  G  SST+ +PS 
Sbjct: 1525 SSGSSTTVGSSTVGATQTSVS---SSTVPNTGSTGSTVTNPSTSSSTSG-SSSTQSIPSS 1580

Query: 366  TCSNGAEPAS 395
            T +N     S
Sbjct: 1581 TAANTGSSTS 1590


>Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical
           protein C33A11.2 protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 263 GSGPQPLLVVSVEVSKSHHLRRWVLLKHAVGPLLHML-----KRS*TCITAVG 406
           G GP P+L+  +   +S  +    +LKH V P+   L     KR  +CI A+G
Sbjct: 9   GFGPLPVLIALIFFVQSFFVYTIAVLKHDVDPIFPYLSSAADKRPQSCIFAIG 61


>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 525 NAHTPALRRKLCSNTWPGYSRYEVSSGAGVCV---SVKKSRAGCAVS 656
           NA     ++ L   TWP  SR+ VS+G GV     S+++S +  A+S
Sbjct: 832 NAVAAFAKQLLNEPTWPNTSRFHVSAGHGVTCRIDSIRQSFSSLALS 878


>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
           transporting ATPase protein.
          Length = 1238

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 525 NAHTPALRRKLCSNTWPGYSRYEVSSGAGVCV---SVKKSRAGCAVS 656
           NA     ++ L   TWP  SR+ VS+G GV     S+++S +  A+S
Sbjct: 832 NAVAAFAKQLLNEPTWPNTSRFHVSAGHGVTCRIDSIRQSFSSLALS 878


>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 525 NAHTPALRRKLCSNTWPGYSRYEVSSGAGVCV---SVKKSRAGCAVS 656
           NA     ++ L   TWP  SR+ VS+G GV     S+++S +  A+S
Sbjct: 832 NAVAAFAKQLLNEPTWPNTSRFHVSAGHGVTCRIDSIRQSFSSLALS 878


>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
           protein.
          Length = 1116

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 525 NAHTPALRRKLCSNTWPGYSRYEVSSGAGVCV---SVKKSRAGCAVS 656
           NA     ++ L   TWP  SR+ VS+G GV     S+++S +  A+S
Sbjct: 710 NAVAAFAKQLLNEPTWPNTSRFHVSAGHGVTCRIDSIRQSFSSLALS 756


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 525 SSGLTSAVAVFGASNNGTCPSCG 457
           S G  +AV  FG S+ G+C SCG
Sbjct: 104 SYGNDAAVGGFGGSSGGSCCSCG 126


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 525 SSGLTSAVAVFGASNNGTCPSCG 457
           S G  +AV  FG S+ G+C SCG
Sbjct: 104 SYGNDAAVGGFGGSSGGSCCSCG 126


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 525 SSGLTSAVAVFGASNNGTCPSCG 457
           S G  +AV  FG S+ G+C SCG
Sbjct: 104 SYGNDAAVGGFGGSSGGSCCSCG 126


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 525 SSGLTSAVAVFGASNNGTCPSCG 457
           S G  +AV  FG S+ G+C SCG
Sbjct: 104 SYGNDAAVGGFGGSSGGSCCSCG 126


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 525 SSGLTSAVAVFGASNNGTCPSCG 457
           S G  +AV  FG S  G+C SCG
Sbjct: 105 SYGADAAVGGFGGSAGGSCCSCG 127


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 525 SSGLTSAVAVFGASNNGTCPSCG 457
           S G  +AV  FG S  G+C SCG
Sbjct: 101 SYGADAAVGGFGGSAGGSCCSCG 123


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +2

Query: 413 QARVDSA--TAPVIYAQPQEGQVPLFEAPKTATADV-----SPDECAHPGFTQEV 556
           Q R++ A   APV  +QPQ G    +  P T+ A       SP+E + P FT  +
Sbjct: 132 QQRIEQAFGPAPVSQSQPQNGSYIQYNEPSTSVASTTTSFYSPNE-SEPVFTHAI 185


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +2

Query: 413 QARVDSA--TAPVIYAQPQEGQVPLFEAPKTATADV-----SPDECAHPGFTQEV 556
           Q R++ A   APV  +QPQ G    +  P T+ A       SP+E + P FT  +
Sbjct: 132 QQRIEQAFGPAPVSQSQPQNGSYIQYNEPSTSVASTTTSFYSPNE-SEPVFTHAI 185


>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 525 NAHTPALRRKLCSNTWPGYSRYEVSSGAGVCVSVKKSRAGCAVS 656
           +AHT + R   C+   P  S   VS    +C++ K SR GC  +
Sbjct: 16  SAHTSSSRTSFCT---PSTSHI-VSPSFPICIAAKCSRCGCVAA 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,812
Number of Sequences: 27780
Number of extensions: 369527
Number of successful extensions: 1185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)