Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25a08
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 313  PPPPQMGTAQ 342
            PPPP+MG+A+
Sbjct: 1702 PPPPRMGSAE 1711


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 352 NRVLEQYPSAEVVALGDFNAHHQEWLGSRTTDLP 251
           N +L+++ S   V LG+ + HH+ +    +T+ P
Sbjct: 509 NPLLQEHDS---VMLGEISPHHEYYDSKSSTETP 539


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 567 YWSTTSCVKP 538
           YW+T +CV P
Sbjct: 104 YWNTKNCVNP 113


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 628 LTETQTPAPDDTSYLEYPGHVLEHN 554
           L  T +  P+D   LE P   ++HN
Sbjct: 273 LFRTASSTPEDLQDLEEPLTTIQHN 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,494
Number of Sequences: 438
Number of extensions: 4238
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)