Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a06
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 229 2e-60
07_01_0578 + 4295386-4296489,4297394-4297507 226 1e-59
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.13
08_02_1278 - 25838146-25839411 32 0.52
03_05_0366 - 23505755-23506441 31 0.91
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.6
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.1
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.1
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.8
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 4.9
04_01_0588 + 7657510-7657992,7658397-7658843 29 4.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.9
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.5
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 8.5
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 8.5
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 229 bits (560), Expect = 2e-60
Identities = 114/206 (55%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
Frame = +2
Query: 101 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 277
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 278 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 457
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 458 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 637
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 638 ILKVYKSQRLRAGKGKMRNRRRIQRK 715
K S +RAGKGKMRNRR I RK
Sbjct: 183 AEKTKDSVAIRAGKGKMRNRRYINRK 208
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 226 bits (553), Expect = 1e-59
Identities = 112/204 (54%), Positives = 136/204 (66%), Gaps = 2/204 (0%)
Frame = +2
Query: 110 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 283
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 284 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 463
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 464 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 643
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 644 KVYKSQRLRAGKGKMRNRRRIQRK 715
K S +R GKGKMRNRR I RK
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYINRK 209
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 290 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 400
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -2
Query: 619 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 512
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 176 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 352
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 353 HRSGQGA 373
+ + + A
Sbjct: 168 NDNDEEA 174
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 73 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 228
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 395 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 288
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 368 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 267
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 365 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 267
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 73 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 228
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 532 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 425
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 212 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 382
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 383 MCRGGRMFAPTKPWRRW 433
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 275 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 379
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 416 SWGRTYVHHDTCYRRHPDRTYEYHH 342
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 292 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 161
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 359 TYEYHH-HGHAEFGRQHVQYPMIQH 288
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,509,989
Number of Sequences: 37544
Number of extensions: 458386
Number of successful extensions: 1763
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -