Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25a04
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    31   0.53 
11_06_0598 - 25391923-25393197                                         30   1.2  
04_03_0070 + 10677677-10679989                                         28   5.0  
09_06_0002 + 20121846-20123308,20123420-20123426                       28   6.5  

>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 554 HFLILQPHSLIFPTLEKRHSPRGSAKKKHLLWCAAF 447
           HFL   P S  F  L  +H P+    + HLL C AF
Sbjct: 32  HFLHRSPPSPCFLLLRTQHKPKPPQPQLHLLLCTAF 67


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +2

Query: 362 MTLRERGVTKPPKKSEKLQQYKKAIAAEQT 451
           ++LR +GVT+ PKK EKL QY + +   QT
Sbjct: 95  LSLRNKGVTQLPKKIEKL-QYLETLDIRQT 123


>04_03_0070 + 10677677-10679989
          Length = 770

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 536 PHSLIFPTLEKRHSPRGSAKKKHLLWCAAFA 444
           P S I P+ ++RHS  G  +K+H L  AA+A
Sbjct: 133 PISSIPPSSQRRHSTGGGGRKRHAL-AAAYA 162


>09_06_0002 + 20121846-20123308,20123420-20123426
          Length = 489

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 226 LTKPTDKNWTSCTLWLTISKIYSRE 300
           L  P+  + T+C+LW+T S I+ +E
Sbjct: 238 LAHPSPSSSTNCSLWMTKSAIFPKE 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,071,746
Number of Sequences: 37544
Number of extensions: 257654
Number of successful extensions: 774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)