Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25a03
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   1.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    24   3.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   3.2  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   3.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    24   4.3  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   4.3  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    23   5.7  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    23   7.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   7.5  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     23   7.5  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    23   9.9  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    23   9.9  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    23   9.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    23   9.9  
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    23   9.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +3

Query: 30  NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGST 209
           N    T A +T+  +N   + + N      TN+           A A   + +  N  +T
Sbjct: 63  NNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPANTNAAYYPNAAAT 122

Query: 210 VWTNAAPSHK 239
             TNA  S K
Sbjct: 123 TTTNADGSDK 132


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 241 NLCDGAALVHTVEPPLL 191
           ++CD  A +H ++PPL+
Sbjct: 168 DVCDAVAAMHYLDPPLI 184


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 140 RWLFGTNRRRQNHVTFY 190
           RWLF + +RRQ + + Y
Sbjct: 329 RWLFSSGKRRQKYESSY 345


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 39  MKTDAQSTSNTHNFMYSPDNNLEVV 113
           M     ST+N+ +F+ SP NN +++
Sbjct: 451 MSLQLPSTANSISFLSSPPNNNDII 475


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 119 NDDHLQIVVGRIHEVVRVRCRLGVRFHN 36
           N DH+ +V G    + R++  L  +FHN
Sbjct: 435 NADHIILVHGEQTNMGRLKSALASKFHN 462


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 85  ILPTTIWRWSSLPIRTAITMAIWN*PPPPKSCHLLLATAVRPC 213
           +L T ++   + P   +++   W  PPP  S +   A  +R C
Sbjct: 12  LLATAVYGQVASPELHSLSRRNWKKPPPFPSTNASYAPVIRSC 54


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 208 PCGPTRRH 231
           PCGPT+RH
Sbjct: 139 PCGPTQRH 146


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 239 FVRWRRVGPHGRTAVANKR*HDFGG 165
           F+RWR+   H + AV  ++  D  G
Sbjct: 30  FIRWRQRDIHEKRAVRKQKMEDIKG 54


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 138  HDGYLELTAAAKIMSPFISNGGSTVWTN 221
            H  Y  +T  A  +SPF+ N     WT+
Sbjct: 1349 HYIYFWITLTALCISPFLYNPHQFAWTD 1376


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 114 IITNSDGDHDGYLELTAAAKIMS 182
           +I N  G H GY+    A+ I+S
Sbjct: 101 VILNQQGQHLGYIAEQGASSILS 123


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 183 PFISNGGSTVWTNAAPS 233
           PF+SNG +  W    P+
Sbjct: 33  PFVSNGSNLTWYCCGPT 49


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 53   PVDIEHAQLHVFSRQ 97
            P D E+A  HVFSRQ
Sbjct: 963  PPDTENAVDHVFSRQ 977


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 41  ENGRPVDIEHAQLHVFSRQQSGGGHHYQFG 130
           EN R  ++ H           GGG  YQFG
Sbjct: 304 ENFRKGEVAHTLGWPMRNDTYGGGFMYQFG 333


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 45  TDAQSTSNTHNFMYSPDNNLEVVIITNSDG 134
           TDA  + N+HN   +  NN + V +++  G
Sbjct: 359 TDASLSPNSHNTSDNEQNNEDYVSVSSLVG 388


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  SNTHNFMYSPDNNLEVVIITN 125
           S+   F+Y P + L +V+ITN
Sbjct: 51  SDNVRFVYQPLDELYIVLITN 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,583
Number of Sequences: 5004
Number of extensions: 22416
Number of successful extensions: 59
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)