Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a03
(271 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0988 - 33340477-33340953 27 1.6
06_01_0169 - 1346281-1349188,1350069-1350184 27 2.1
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 26 3.6
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954... 26 3.6
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 26 4.7
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 26 4.7
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 26 4.7
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 26 4.7
03_02_0521 - 9093932-9094252 26 4.7
08_02_1040 - 23873354-23874509,23875645-23875796 25 6.3
02_05_1202 + 34932291-34933027,34933297-34933774 25 6.3
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 25 6.3
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 25 8.3
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233... 25 8.3
>02_05_0988 - 33340477-33340953
Length = 158
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = +1
Query: 181 HLLLATAVRPCG-PTRR 228
HLLL TA RPCG P RR
Sbjct: 13 HLLLPTASRPCGAPPRR 29
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 12 LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVII 119
+ C + IM+ S S NF+YS +N+ VI+
Sbjct: 493 VKSCRVHDIMRDIIVSISKEENFVYSTGDNVSTVIV 528
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 160 PPPPKSCHLLLATAVRPCGPTRRHRTN 240
PPPP A A RPC P+ T+
Sbjct: 21 PPPPPPAKAAAAEAERPCPPSSAATTS 47
>01_06_1233 -
35594510-35594687,35594985-35595100,35595364-35595463,
35595536-35595603,35596940-35597071
Length = 197
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 33 GIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNG 200
G+MK +A TS + N I+ N + YL+L + M F S G
Sbjct: 93 GVMKNEAMGTSQGSTVLCYHYNFCHFYILENLSNRYSPYLQLMCWGRYMHYFQSFG 148
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 42 KTDAQSTSNTHNFMYSPDNNLEVVII 119
K+ S S+ +NF++SPD+N ++
Sbjct: 310 KSYITSPSDLNNFLFSPDSNFRQTVV 335
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 160 PPPPKSCHLLLATAVRPCGPT 222
PPPP H LA +R C PT
Sbjct: 246 PPPPPPQHSKLAEFLRICPPT 266
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 160 PPPPKSCHLLLATAVRPC 213
PPPP+ CH A R C
Sbjct: 83 PPPPRCCHRRRRVAARCC 100
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 25.8 bits (54), Expect = 4.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 160 PPPPKSCHLL 189
PPPP+ CHLL
Sbjct: 71 PPPPRRCHLL 80
>03_02_0521 - 9093932-9094252
Length = 106
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 RLFLSGCYKNGIMKTDAQSTSNTHNF--MYSPDNNLEVVIITNSDGDHDG 146
RL G K+G+ + A + ++ + M SP L V+I ++DG H G
Sbjct: 11 RLPRRGREKSGLPRKTASTLPSSPSLGPMSSPTRELPGVVILDNDGFHSG 60
>08_02_1040 - 23873354-23874509,23875645-23875796
Length = 435
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 24 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDH 140
Y G M+ D + + + + PD EV +I+ D DH
Sbjct: 145 YLIGRMQMDGEEIAVVSSPLVEPDTIAEVPVISMDDDDH 183
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 215 PHGRTAVANKR*HDFGGGG 159
PHGR A+++ D GGGG
Sbjct: 374 PHGREALSSSAAADAGGGG 392
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 173 FGGGG*FQIAIVIAVRIGNDDHLQIVVGRIHEVVRVRCRLGV 48
+GGGG + ++ G D H +V R E VRV +GV
Sbjct: 412 YGGGGGAMTRAIGSLMHGGDQHAGVVDRRRGEGVRVVDYMGV 453
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 47 GRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSR 142
GR Q+H SR+ G HH Q ++R
Sbjct: 150 GRRAPSPSPQMHAASRRHHHGRHHQQVAPKAR 181
>01_07_0255 -
42322111-42322308,42322658-42322750,42323127-42323344,
42323476-42323642,42324097-42324207,42324267-42324409,
42324492-42324710,42324975-42325055,42325202-42325381,
42325971-42326301,42326775-42326888,42327036-42327127,
42327631-42328059
Length = 791
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 121 PIRTAITMAIWN*PPPPKS-CHLLLATAV 204
P R + W PPPP H LL+TAV
Sbjct: 23 PFRRFLHSPSWRPPPPPPPRRHRLLSTAV 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,023,952
Number of Sequences: 37544
Number of extensions: 191023
Number of successful extensions: 507
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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