Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a02
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.34
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 29 0.45
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 29 0.45
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.4
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 4.2
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 26 4.2
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 25 7.4
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 7.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 7.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 9.7
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc... 25 9.7
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.34
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -2
Query: 329 FRLHSD*AVTLKV*YIEYYKHCTMPPLPNGEV--PVKNTDDNHSKQS--QNSLANTIFLN 162
F L + +L Y+ Y K C L NG P K T N Q N ANT F+
Sbjct: 251 FSLQREIESSLIANYLRYTKLCESNTLLNGLTIRPQKPTPTNCGLQHALDNINANTDFVQ 310
Query: 161 YLLHQS 144
Y+LH S
Sbjct: 311 YVLHAS 316
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 29.5 bits (63), Expect = 0.45
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -2
Query: 179 NTIFLNYLLHQSYIQQAHY---HTYALFK*STNSFFFKCSDTR 60
N+ F+NYL+ ++Y ++ + H A F T + FF C R
Sbjct: 291 NSKFINYLIEENYSKRLEFNFPHKRAAFMEITRNMFFSCLGPR 333
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 315 RMKSKVVKMKILPTGGQKESYTLLSARRRYMKKLMRQHV 431
+++ KVV+ I GG+KE+ + A RR MKK ++H+
Sbjct: 168 KIRHKVVQQHIAQLGGKKETEKMPMAARRGMKK-KQKHI 205
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -3
Query: 232 LLKTLTITIVNNPKIVSRIQYFLIIYYIRVISNKHIITHTHFSNNPQTVFFLNVRTRA 59
+L T+ +V+ V R Q + +++ IS H+I H H +P + F+N +A
Sbjct: 3144 ILGVYTLAVVHP---VLRKQQLVAFIHVKGISASHLIVHDH--KDPSLIGFINSACKA 3196
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 200 QSQNSLANTIFLNYLLHQSYIQQAHYHTYALFK*STNSFFFKCSDTR 60
QSQN + L+H + HY YAL K + ++K DTR
Sbjct: 442 QSQN--CEYVLYGVLVHSGDLHNGHY--YALLKTEKDGPWYKYDDTR 484
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 245 NGEVPVKNTDDNHSKQSQNSLAN 177
N ++P+++T DNH+ SL+N
Sbjct: 325 NIQIPIQSTSDNHTVTVDRSLSN 347
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 157 YYIRVISNKHIITHTHFSNNPQTVFFLNVRTRAFVYST 44
+Y + I+ TH + +P ++ + R +A +YST
Sbjct: 204 FYFNKLREIEILVQTHLTTSPMSMENMLERIQAILYST 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 50 QHSVTNYHSQRESK 9
+HS TNYHS+R+ +
Sbjct: 167 RHSTTNYHSKRDDR 180
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 543 PPYFSQVTRPENRHS-VPVGSATRDKQYSGLPPSPAVACQA 662
PP S ++P + VP+ + +QY LPP+ A A
Sbjct: 89 PPSVSIASQPHYAEAIVPIQQVLQPQQYRQLPPNMVAATNA 129
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 143 YIQQAHYHTYALFK*STNSFFFKCSDT 63
YI Q Y T LFK SFF SD+
Sbjct: 318 YISQIVYKTPELFKNHIKSFFLIASDS 344
>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
Rec25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 236 VPVKNTDDNHSKQSQNSLANTIFLNYL 156
V KNTD NH Q+Q + I+ L
Sbjct: 50 VEEKNTDQNHQNQNQEGVIIEIYQELL 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,288
Number of Sequences: 5004
Number of extensions: 62913
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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