Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25a02
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    30   1.4  
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230...    30   1.9  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    29   3.3  
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447           29   3.3  
04_04_1202 - 31700414-31700854                                         29   3.3  
05_05_0377 - 24498664-24500215,24500306-24500643                       28   5.8  
04_03_1035 - 21887562-21890030                                         28   5.8  

>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
            24030162-24030455,24031490-24031717,24031827-24032006,
            24032079-24032238,24032591-24032617,24033426-24033613,
            24034269-24034532,24035123-24035218,24035311-24035399,
            24035473-24035620,24035842-24036051,24036141-24036440,
            24037906-24038248,24038747-24038952,24039071-24039273,
            24040021-24040117,24040148-24040222,24040328-24040602,
            24041116-24041256,24041469-24042339,24042481-24042520,
            24042605-24043050
          Length = 1808

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 167  LNYLLHQSYIQQAHYHTYALFK*STNSFFFKCSDTRFRLQHSVTNYHSQRESKSN 3
            LN+ +H +  +Q H     + + +  S F K S   F + H + +Y    E +SN
Sbjct: 1629 LNFEVHYALQEQPHILLAQIAQRTARSVFVKASGVNFEVFHKLVDYLDINEVRSN 1683


>05_05_0252 -
           23621592-23621912,23621958-23622317,23622979-23623059,
           23623262-23623633
          Length = 377

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +3

Query: 318 MKSKVVKMKILPTGGQKESYTLLSARRRYMKKLMRQHVSAPWSSSTAAGTRAQHELFELL 497
           +  KV+K  +   G  K + T +    R    L+  +     S+     +R   E  +L 
Sbjct: 291 LSEKVIKAILKDNGETKTTTTTVPESVRLSPDLVMFYRPVEGSTEVLVASRDYIEYLDLT 350

Query: 498 ERVQCSR---LDDQRAVLPPYFS 557
           ++  C +   L DQRAVLP  FS
Sbjct: 351 KKPGCHQAVSLLDQRAVLPTSFS 373


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 257 PPLPNGEVPVKNTDDNHSKQSQNSLANTIFLN 162
           P LPNG++ V + D NHS     +  N   LN
Sbjct: 624 PALPNGDLRVNDLDANHSDHLHKTSFNQPLLN 655


>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
          Length = 607

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 385 CQREGDT*RNLCGSTCRRHGALQQRRVLVLNTSYLSYLN 501
           C  E D  +N CGS+C    ALQ +RV   N   +  L+
Sbjct: 92  CASENDD-KNCCGSSCHIECALQHKRVGCFNLGNIIQLD 129


>04_04_1202 - 31700414-31700854
          Length = 146

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 537 VLPPYFSQVTRPENRHSVPVGSATRDKQYSGLPPSPAV 650
           V PP  S + RP  R   P    T  ++    PP PA+
Sbjct: 14  VAPPLLSSIIRPRRRRGFPAMLDTIAEEEPDAPPLPAI 51


>05_05_0377 - 24498664-24500215,24500306-24500643
          Length = 629

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 417 MRQHVSAPWSSSTAAGTR--AQH-ELFELLERVQCSRLDDQRAVLPPYFSQVTRPE--NR 581
           M + V+A  S + AA T   A+H E  E +ERV  +   +QR VL    +Q  + E   R
Sbjct: 1   MPEAVAAAVSPAAAAATAMCAEHREKLEHIERVTRNAGQEQRRVLEEILAQNAQAEYLRR 60

Query: 582 HSVPVGSATRDKQYSGLPP 638
             VP  +   D+ +  L P
Sbjct: 61  LGVPGDAPGADEAFRRLAP 79


>04_03_1035 - 21887562-21890030
          Length = 822

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 378 TLLSARRRYMKKLMRQHVSAPWSSSTAAGTRAQHELFELLERVQCSRLDDQRAV 539
           +L   R   +K+  R+    P SSS AA  R  HE   + E    SR++ +  V
Sbjct: 497 SLPDGREVAIKRAERRDTGGPSSSSAAAARRVDHEAAFVSELALLSRVNHKNLV 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,199,724
Number of Sequences: 37544
Number of extensions: 418685
Number of successful extensions: 1110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)