Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24p18
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    29   0.55 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    28   0.72 
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    27   2.2  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   5.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.7  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   6.7  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   6.7  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   8.9  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 66  LRSFCEISVPPSVNAIKSVIWNGLHHSGLPKLGFGSQNVSQIT 194
           LRS  ++ +P  VN I  +    L +  +P LGF     +Q+T
Sbjct: 121 LRSAMDLLIPKLVNVINRLSQWSLRYKDIPTLGFTHYQPAQLT 163


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 257 QTQMVHELRSSKEVGEIKPEMNAAVSTESMDMT---EEDMSQVEGCGLSGGSEDEDECAS 427
           Q Q+  E     ++ +   +M      +  D++   E+D  + E   L G  E+E+E   
Sbjct: 229 QEQLSTENEDEFDIDDTTDKMTTFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEEEEKE 288

Query: 428 SPAGSNYDD 454
            P  SNYD+
Sbjct: 289 KPEISNYDE 297


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 287 SKEVGEIKPEMNAAVSTESMDMTEEDMSQV 376
           S + GEIKPE+   ++T+  +  EE  +++
Sbjct: 256 SGDTGEIKPEVREQINTKVSEWREEGKAEI 285


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 166 NPSFGSPL*CNPFQITLFIAFTLG 95
           +PS G PL C  F I  F+ + LG
Sbjct: 384 DPSTGRPLRCTNFTIINFVLYHLG 407


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 306  ISPTSFDDLSSWT 268
            + PT+FD LS+WT
Sbjct: 1651 LQPTNFDSLSNWT 1663


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 332 STESMDMTEEDMSQVEGCGLSGGSEDEDECASSPAGSN 445
           +  S D   ED S      L GG E+ D   S+ AGS+
Sbjct: 56  NVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSS 93


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +2

Query: 266 MVHELRSSKEVGEIKPEMNAAVSTESMDMTEEDMSQVEGCGLSGGSEDEDECASSP 433
           ++HE  SS    +   E  ++V+  S   T+ D+  VEG       +D++     P
Sbjct: 222 LIHERPSSLSKPKKDGEETSSVNKPSASSTQTDVKGVEGLRKRNVKDDQNSKGHEP 277


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 299 GEIKPEM--NAAVSTESMDMTEEDMSQVEGCGLSGGSEDEDECASS 430
           GE+  +   N+  S ES  + +ED S++    L    ED++   S+
Sbjct: 327 GEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHEDDESSTST 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,225
Number of Sequences: 5004
Number of extensions: 37090
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)