Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24p18
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   10.0 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   10.0 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   10.0 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   10.0 

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +2

Query: 293 EVGEIKPEMNAAVSTES-----MDMTEEDMSQVEGC-GLSGGSEDEDE 418
           E G++KP     +S E      +DMT  +   + G   ++GG +  DE
Sbjct: 255 EDGKLKPNKKVRISNEMSKVKVIDMTGPEQRILSGYHAIAGGQQRPDE 302


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 104 HTRRNTDFTKTAECTRDPENSES 36
           H+RR+ DFT          NS+S
Sbjct: 30  HSRRHRDFTVAESYDASSSNSDS 52


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 63  ALRSFCEISVPPSVNAIKSVIWNGLHHSGLPKL 161
           A+RS     +PPS  A    I N  + SG+P L
Sbjct: 400 AVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPL 432


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 307 KTRDERRRQHRVH 345
           K+ +ER R+H VH
Sbjct: 98  KSLEERERKHAVH 110


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 392 SGGSEDEDECASSP 433
           SG +EDEDE    P
Sbjct: 432 SGSNEDEDETPLDP 445


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 69  RSFCEISVPPSVNAIKSVIWN 131
           RSF   S PP   + +  +WN
Sbjct: 20  RSFYSASYPPQNRSQEEDLWN 40


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 386 GLSGGSEDEDECASSPAGS 442
           G+  G+E  D+ ASS A S
Sbjct: 581 GIESGTEKPDKPASSSASS 599


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,080
Number of Sequences: 438
Number of extensions: 2550
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)