Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24p10
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    31   0.17 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   6.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   8.7  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = +2

Query: 281  TFLNTASFYANVQCLNGVNEIMPPRSSVKRYYGRDVDNVRAWTTRHPNISQLSTQVSDVH 460
            TFL+  S+  ++Q     N+ +  R  +  Y G D+ N    TT+  ++SQ   +V D++
Sbjct: 941  TFLDRNSYAESIQTSRSYNDDLIARDPIA-YVGTDMTNAFGTTTKPKDVSQSDIKV-DIN 998

Query: 461  INESSTD 481
              ES++D
Sbjct: 999  -RESNSD 1004


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 542 KKIITFLPKPNSLIDSECLLYGD 610
           K I + LPK + LI +E L+Y D
Sbjct: 316 KNITSLLPKQDPLISTEILVYND 338


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  NVFLKKLKTNKFTDTINYLI 97
           NVF++ L TNK  + INYLI
Sbjct: 644 NVFME-LNTNKLANAINYLI 662


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 257 YAVQYLYSTFLNTASFYANVQCLNGVNEIMPPRSSVKRYYGRDVDNVRAWTTRHPNISQL 436
           YA    Y+T  NT+ FY  V   NG N  + P++       RD+ N +A +T    ++  
Sbjct: 246 YAEDSAYNT--NTSLFYGVVGHQNGSNGFISPKNLT-----RDLLNYKANSTLFGGVTIW 298

Query: 437 STQVSDVHINESS 475
            T ++ +  + SS
Sbjct: 299 DTSLAAMSYDNSS 311


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 582 IRELGLGKNVIIFLSPSQSVLAPGNIPRPTFTFQSVDDSLMCTSETCVLSWLML 421
           IR    G+++II     Q ++   + P P   F+++    +  +E C LS + L
Sbjct: 397 IRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEALSTVQLLMTEVCFLSKITL 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,303
Number of Sequences: 5004
Number of extensions: 67662
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)