Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24p10
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0171 - 13062794-13064017                                         29   5.2  
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420           28   9.1  

>09_03_0171 - 13062794-13064017
          Length = 407

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 546 FLSPSQSVLAPGNIPRPTFTFQSV----DDSLMCTSETCVL 436
           +L+  +++L    +P+PTFT   V    D S  CT  TC L
Sbjct: 254 YLNQDKAILTLEFLPKPTFTTTPVKDAPDPSYWCTFSTCFL 294


>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
          Length = 1407

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 703 LHCVNIFVQIINLLRHKRQTVFVKANEIEPRVAVQKTFRV 584
           L C+  F  ++N      +T+F  +NE++PR+A    F +
Sbjct: 792 LCCLCKFTTLLNPYATTEETLFTFSNELKPRMATLALFTI 831


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,526,467
Number of Sequences: 37544
Number of extensions: 428680
Number of successful extensions: 969
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)