Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24p10
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical ...    32   0.50 
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    30   2.0  
Z92830-6|CAB07359.2|  360|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical
           protein H22K11.2 protein.
          Length = 644

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 107 FILWDHNFVIFLNKAFNSKHENNLVDISGALQKIKLTHGVIKDQLQSKNGYAV 265
           +I  + NFV  L K F S H NN +D+ G L +      +I+   +  N Y V
Sbjct: 441 YIFLNQNFVGALYKQFGSIH-NNTIDVQGCLDQFNSLEIIIEITGRDHNNYPV 492


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 44  FLKKLKTNKFTDTINYLILPHFILWDHNFVIFLNKAFNSKHE 169
           F+K+ KT+  T  I Y+ +  FI      +I+L KAF  K E
Sbjct: 251 FIKENKTDLSTKLIGYMTVGFFITGTPLGIIYLTKAFFDKSE 292


>Z92830-6|CAB07359.2|  360|Caenorhabditis elegans Hypothetical
           protein F11A5.7 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -3

Query: 225 TPCVSLIFCRAPEMSTRLFSCLELKALFKNITKL*SHKIKWGKIK*LMVSVNLFVFNFLR 46
           TP  +   C  P+M  R+F  LE+ +   ++  + S +I +G +  ++   NL  FNFL 
Sbjct: 186 TPTKTEKLCMPPQMCLRVFGDLEIGS-GSDLNSMKSVQIIFGSL--IINRTNLTNFNFLE 242

Query: 45  N 43
           N
Sbjct: 243 N 243


>Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical
           protein R05H5.7 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 518 ANTDCDGDKKIITFLPKPNSLI 583
           +N  C G+KKIIT  P P+SL+
Sbjct: 122 SNGYCCGNKKIITECPSPSSLV 143


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 284 FLNTASFYANVQCLNGVNEIMPPRSSVKRY 373
           FLN A+FY N+  +   +  +PP  SV  Y
Sbjct: 90  FLNHATFYNNMDIMQAASGDVPPLMSVNPY 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,948
Number of Sequences: 27780
Number of extensions: 393497
Number of successful extensions: 1130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)