Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24p05
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   2.7  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   3.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.1  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    26   6.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.1  

>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = +2

Query: 446 DLSVRRCSPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSNTGYVSAFVP 625
           +L  +  + +T   PP  P  P  P ++      E+     P+I++  + N  +    +P
Sbjct: 170 ELEEQLLNSMTAPKPPSQPAIPIVPSEMAAQVTRENISSLDPAISAASIGNVTFGQPNIP 229

Query: 626 VQSAAGCALTACSAPHWCAAMPS 694
             +     L A +  H   A+P+
Sbjct: 230 STTTDFAGLAAPNMVHPSQAIPN 252


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 314 EEVMAPAVELSLTAPLAKQVQLVATFGSVCDGCQTS*R 201
           +E +   ++ +    +A +V +VA FG V  GC TS R
Sbjct: 197 KESLVDGIKRATDVMIAGKVAVVAGFGDVGKGCSTSLR 234


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 299 PAVELSLTAPLAKQVQLVATFGSVCDGCQTS*RWHVGFLYI 177
           P V +  T+ + +    V+ F ++C        WHVG L +
Sbjct: 176 PQVSVLFTSSVKRSPHGVSWFATICSETHIENEWHVGPLSV 216


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 677 TNEEQNTRSRRNPLHFVLAQTQKHILYSKLAMKRLMVASHL 555
           T EE +T    +PL  V+       L   ++ KR+MV SH+
Sbjct: 177 TKEEDSTDPEEDPLLHVINHGASIHLAKFVSKKRVMVLSHM 217


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 223  SQTDPKVATS*TCFASGAVKESSTAGAITSSI 318
            S+ DP  A S T  ++ ++  +S +G+ TSS+
Sbjct: 960  SEVDPSTAASATGSSTSSIATASVSGSSTSSV 991


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +2

Query: 488 PPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSNTGYVSAFVPVQSAAGCALTA 658
           PP  P+  + P    +  +++   + +PS+ +  V+    +++ VPVQ+AA  + TA
Sbjct: 744 PPHLPQA-QLPSATGQSGVVQQPYQTQPSVTNNNVATQPVIASTVPVQTAAPSSQTA 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,675
Number of Sequences: 5004
Number of extensions: 45433
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)