Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24p05
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 30 2.1
12_02_0063 + 13098519-13099585,13099759-13099906 29 2.8
09_02_0369 - 8012470-8013120 29 3.7
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 29 3.7
04_04_0708 - 27441373-27442611 29 4.8
12_02_0493 - 19677481-19677776,19678953-19679017,19679455-196795... 28 6.4
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 28 6.4
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 28 6.4
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638... 28 6.4
02_01_0496 + 3595388-3596185 28 6.4
06_01_0292 + 2136637-2137050,2137162-2137671 28 8.5
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 28 8.5
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 425 QPSTEPIDLSVRRCSPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLP 589
QP P V PL PP+ P PP P P + E E+E PS+ + P
Sbjct: 673 QPPFYPRRAVVYYTYPLPPPSPPLPPPPPPPP-----PPMSEGEEEAPPSVTASP 722
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Frame = +2
Query: 470 PLTLAHPP-----VAPEPPRKPFKLFRPYLLEDE--DEKRPS--IASLPVSNTGYVSAFV 622
P LA PP AP+ P P ++ P + + + +KRP+ +A P + A
Sbjct: 178 PQELAPPPYPAAQAAPQAPAPPRQV--PVITQQQAPPQKRPAAPVAEPPCATKKMKGAVS 235
Query: 623 PVQSAAGCALTACSAPHWCAAMPSYSAP 706
A ++TA +AP CA PS P
Sbjct: 236 AKPMAPQSSVTASAAPPRCAVAPSQHHP 263
>09_02_0369 - 8012470-8013120
Length = 216
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 482 AHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSN 598
A PP EPP KP F P +L E A+ P SN
Sbjct: 61 AQPPPPDEPPLKPPPSFYPAVLPPEPPPPRRPAATPYSN 99
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 419 LVQPSTEPIDLSVRRCSPLTLAHPPVAPEPPRKP 520
L+ P P + +R L+L+ PP P PP P
Sbjct: 28 LIAPDAAPDEARLRPLLSLSLSPPPTPPSPPPPP 61
>04_04_0708 - 27441373-27442611
Length = 412
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 416 ALVQPSTE-PIDLSVRRCSPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPV 592
A+ PS+ DL++ CSP L PP P PP P+L D RP++
Sbjct: 218 AIPSPSSVLDADLTLSPCSPPLLPPPPPPPPPP--------PFL----DHDRPALRKAKA 265
Query: 593 SNTGYVSAFVPVQSAAGC 646
+ V +Q+AAGC
Sbjct: 266 RSFNDYGR-VGLQTAAGC 282
>12_02_0493 -
19677481-19677776,19678953-19679017,19679455-19679594,
19680723-19680801,19683476-19683675
Length = 259
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 586 ASFEYRICFCVCAS-TKCSGLRLDRVFCSSLVCSYAL 693
ASFE RIC C CA+ G + + + ++C L
Sbjct: 101 ASFETRICLCGCANQPDLEGPEVPNIITTGVLCQIIL 137
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Frame = +2
Query: 479 LAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPV----SNTGYVSAFVPVQSAAGC 646
L + P P PP P F P+L + + P + P + G A A
Sbjct: 48 LENAPALPPPPPPPPAPFFPFLPDSAPPQLPPPVTTPAPAGGAGDGGTDAGAAATGDASS 107
Query: 647 ALTACSAPHWCA-------AMPSY-SAPLR 712
+ ++ ++PH A AMP Y SAPLR
Sbjct: 108 SSSSSASPHPTAPANISYMAMPIYHSAPLR 137
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 458 RRCSPLTLAHPPVAPEPPRKPFK 526
RR P T PP P PPR P K
Sbjct: 19 RRSKPATAPPPPPPPTPPRPPQK 41
>06_01_0842 +
6383033-6383430,6383548-6383627,6383974-6384085,
6384355-6384454,6384682-6384744,6385857-6386011,
6386109-6386286,6386787-6386954
Length = 417
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 536 PYLLEDEDEKRPSIASLPVSNTGYVSAFVPVQ--SAAGCA 649
P+ L+DED P +AS P+ G PV+ + AGC+
Sbjct: 356 PFPLDDEDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCS 395
>02_01_0496 + 3595388-3596185
Length = 265
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 1 EFGAVNQHAHTYPQ*NGSRPHAPCPRALR 87
+FG HAH P P APCP LR
Sbjct: 60 QFGKTKVHAHGCPFFGHPSPPAPCPCPLR 88
>06_01_0292 + 2136637-2137050,2137162-2137671
Length = 307
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 86 DRRAEGRAGSRRIFPPQFKLQVLE-AYRRDSQCRGNQR-ATARKFGIHRRQIQKWLQ 250
D A+G G +++ + + VLE ++ S Q+ A A + G+ RQ++ W Q
Sbjct: 104 DDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQ 160
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 470 PLTLAHPPVAPEPPRKPFKLFRPYLLE 550
P A AP PPR+P +L R Y +E
Sbjct: 140 PAADAAAEAAPAPPRRPAELLRAYTVE 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,265
Number of Sequences: 37544
Number of extensions: 351864
Number of successful extensions: 1378
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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