Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24p05
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    32   0.35 
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AL023828-3|CAA19468.1|  572|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   4.4  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   4.4  
U58739-1|AAB00607.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +2

Query: 431  STEPIDLSVRRCSPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSNTGYV 610
            + +P DLS ++  P+        P P + P K ++P   +D++   P  A  P   T  +
Sbjct: 953  AAKPRDLSPKKAIPIPANTQEAPPTPVKNPVKKWKPPWEDDDEPAEPVSAPEPEKKTPVL 1012

Query: 611  SAFVPVQ 631
            +   P +
Sbjct: 1013 AKKAPAK 1019


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 25/93 (26%), Positives = 35/93 (37%)
 Frame = +2

Query: 428 PSTEPIDLSVRRCSPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSNTGY 607
           P  EP   +   C P T  + P A   P  P  +    +++      P    +P+     
Sbjct: 114 PVYEPYACAAPPCPPPTPVYEPYACAAPPCPAPVAPQPVIQHVPVPVPVQVPVPIRVPVP 173

Query: 608 VSAFVPVQSAAGCALTACSAPHWCAAMPSYSAP 706
           V    PV     CA+  C AP   AA P Y+ P
Sbjct: 174 VPVPTPVYQPTYCAVPPCPAP---AATPVYAQP 203


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +2

Query: 419  LVQPSTEPIDLSVRRCSPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIAS----L 586
            ++ P+  P   S ++ SP+     P+ P  P +P  +  P   ++  +  P   S    L
Sbjct: 1499 VIPPAPAPTPTSQQKVSPVK---RPIPPSIPNEPLDIIPPVPSDNIPDPTPPTNSFGTVL 1555

Query: 587  PVSNTGYVSAFVPVQSAAGCALTACSAP 670
            PV +T   S  VP QS    + T    P
Sbjct: 1556 PVPHTFQTSVRVPTQSLFSSSSTTTVQP 1583


>AL023828-3|CAA19468.1|  572|Caenorhabditis elegans Hypothetical
           protein Y17G7B.2b protein.
          Length = 572

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 226 QTDPKVATS*TCFASGAVKESSTAGAITSSICCWFPRKCKITYTTSTSYDANVSF-IAYT 402
           Q  PK A +  C+  G  +E  +   + S+   WF  +C   +   +     V F I YT
Sbjct: 11  QAAPKTAPTTVCYCDGK-RELGSVEVVCSTCLKWFHGRCLKEFHEFSRNSNGVPFMICYT 69

Query: 403 STC 411
            TC
Sbjct: 70  FTC 72


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 117 AVFFHHNLNYKSLKRTDVIPNVEETNVPPLGSLASIADRSK 239
           A F+ ++ NYK    T ++P VE+T +  L   +++    K
Sbjct: 137 AAFYSNSGNYKGFGDTKIVPGVEQTKIRALLEKSAVGTDEK 177


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 117 AVFFHHNLNYKSLKRTDVIPNVEETNVPPLGSLASIADRSK 239
           A F+ ++ NYK    T ++P VE+T +  L   +++    K
Sbjct: 99  AAFYSNSGNYKGFGDTKIVPGVEQTKIRALLEKSAVGTDEK 139


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 117 AVFFHHNLNYKSLKRTDVIPNVEETNVPPLGSLASIADRSK 239
           A F+ ++ NYK    T ++P VE+T +  L   +++    K
Sbjct: 137 AAFYSNSGNYKGFGDTKIVPGVEQTKIRALLEKSAVGTDEK 177


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +2

Query: 470 PLTLAHPPVAPEPPRKPFK-LFRPYLLEDEDEKRPSIASLPVSNTGYVSAFVPVQSAAGC 646
           PL L++PP  P PP  P K   RP  +      RP  AS PV    Y       Q     
Sbjct: 79  PLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPP-ASEPVGIPLYSEKQHQQQLRPTT 137

Query: 647 ALTACSAPHWCAAMPSYSA 703
           A++    P +   +P  +A
Sbjct: 138 AVSPPKPPSFAPPVPPAAA 156


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +2

Query: 470 PLTLAHPPVAPEPPRKPFK-LFRPYLLEDEDEKRPSIASLPVSNTGYVSAFVPVQSAAGC 646
           PL L++PP  P PP  P K   RP  +      RP  AS PV    Y       Q     
Sbjct: 301 PLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPP-ASEPVGIPLYSEKQHQQQLRPTT 359

Query: 647 ALTACSAPHWCAAMPSYSA 703
           A++    P +   +P  +A
Sbjct: 360 AVSPPKPPSFAPPVPPAAA 378


>U58739-1|AAB00607.1|  392|Caenorhabditis elegans Hypothetical
           protein F28C10.3 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 614 QKHILYSKLAMKRLMVASHLHLQVSKVGII*TACE 510
           +KHI++  + ++ L++ +  HL ++  G+  T C+
Sbjct: 145 EKHIVHRDVKLENLLIGNDGHLMITDYGLSATGCD 179


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 467  SPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKRPS 574
            +P T   PP  PE P KP +  +P  +  E  K+P+
Sbjct: 1329 TPKTSIPPPTEPEKPIKPSEQKKPNAIPVERPKQPT 1364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,539
Number of Sequences: 27780
Number of extensions: 271392
Number of successful extensions: 1030
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)