Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24o10
(355 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 42 4e-05
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 40 1e-04
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 38 6e-04
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 36 0.001
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 34 0.007
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 30 0.12
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 28 0.37
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 0.37
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 2.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 7.9
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 41.5 bits (93), Expect = 4e-05
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 278 LLQGYDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALDP-ADKIILRIL 108
L GY+T+ G++G++LSGGQKQ LDE TSALD ++K++ L
Sbjct: 1244 LPNGYNTLCGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEAL 1301
Score = 35.9 bits (79), Expect = 0.002
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -3
Query: 278 LLQGYDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALDPADKIILR 114
L + + T +G+RG +SGGQKQ LDE TSALD +++++
Sbjct: 553 LPEQFSTNVGQRGFLMSGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQ 607
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 39.5 bits (88), Expect = 1e-04
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 272 QGYDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALDP-ADKIILR 114
+GY T +GERG +SGG+KQ DE TSALD ++ +LR
Sbjct: 567 EGYQTKVGERGLMISGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALLR 620
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 37.5 bits (83), Expect = 6e-04
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = -3
Query: 269 GYDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALD 138
GY++ +GERG LSGG+KQ LDE TSALD
Sbjct: 709 GYNSRVGERGLKLSGGEKQRVAVARAILKDPSIILLDEATSALD 752
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 36.3 bits (80), Expect = 0.001
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = -3
Query: 272 QGYDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALDPADK 126
Q YDT E A+LSGGQ+Q LDEPTSALDP K
Sbjct: 560 QSYDTPCKE--ASLSGGQQQRIALARALLRDTEILILDEPTSALDPITK 606
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 33.9 bits (74), Expect = 0.007
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3
Query: 266 YDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALDPADKIIL 117
+ T +G RG LSGGQKQ LDE TSALD ++++
Sbjct: 609 WSTQVGTRGLQLSGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMV 658
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.9 bits (64), Expect = 0.12
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 260 TMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALD 138
T +GE+G LSGGQKQ +D+ SALD
Sbjct: 731 TEIGEKGVTLSGGQKQRIALARAVYSPTSIVLMDDVFSALD 771
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 28.3 bits (60), Expect = 0.37
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 272 QGYDTMLGERGAALSGGQK 216
+G T +G++GA+LSGGQK
Sbjct: 691 EGDQTEVGQKGASLSGGQK 709
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 0.37
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 278 LLQGYDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALD 138
L G T +GE+G +LSGGQK LD+ SA+D
Sbjct: 691 LADGDQTEVGEKGISLSGGQKARISLARAVYSRSDIYLLDDILSAVD 737
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -3
Query: 284 NPLLQGYDTMLGERGAALSGGQKQXXXXXXXXXXXXXXXXLDEPTSALD 138
N + G T + G++LSGGQKQ D+ SALD
Sbjct: 690 NSMNDGDLTYIHSNGSSLSGGQKQRVSLARALYSNAEVYIFDDIFSALD 738
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 23.8 bits (49), Expect = 7.9
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 50 KITSVQLLHFRI*Y*F*S*IGS*G*FYQQGLAQKSARPIARQRDV*LWHVLSRFSASV 223
++ + LHF + S I S G FYQ G+ + + IA R + +W +LS + +V
Sbjct: 649 RVVEEEELHFVLLEVISSVINS-GIFYQ-GIGLSALQQIASTRHISVWQLLSPYWPTV 704
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,175,064
Number of Sequences: 5004
Number of extensions: 17564
Number of successful extensions: 49
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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