Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o09
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...   213   2e-56
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   4.3  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.7  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    26   5.7  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.5  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   9.9  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   9.9  

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score =  213 bits (520), Expect = 2e-56
 Identities = 103/187 (55%), Positives = 130/187 (69%), Gaps = 6/187 (3%)
 Frame = +2

Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
           MD+QNR G + GGGGVA + E+N  RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1   MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60

Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXP-----EKPRIEPKK-FVKIGR 469
           T H NE SYL HTQGKKHQ                          +  ++ KK  VKIGR
Sbjct: 61  TTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSVVKIGR 120

Query: 470 PGYRVTKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAE 649
           PGY+V+K ++ E+G+  L FQ+ YP+I     PR+R MSAYEQ++E PDR++QYL+ AAE
Sbjct: 121 PGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAE 180

Query: 650 PYETIAF 670
           PYE+IAF
Sbjct: 181 PYESIAF 187


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 293 CKLCLTLHNNEGSYLAHTQGKKHQ 364
           C++C     +EG+Y +H   KKH+
Sbjct: 72  CEVCNKKFYSEGAYSSHMASKKHR 95


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 NRPGGKTGGGGVASWSESNRDRRERLRQLA 229
           NR G   GGG    + +SNR  R R +Q A
Sbjct: 455 NRGGHPRGGGNRGGYRQSNRQPRYRGQQKA 484


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 558 VLYLDIDLCLLMNRRLSLQTADGSICYLQQSLMK 659
           + +LD D  L+MN+ LSLQ    S   LQ+SL++
Sbjct: 156 IWWLDQD-ALIMNKNLSLQELFLSPAMLQKSLLR 188


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 185 SESNRDRRERLRQLALETIDLNKDPYFMKN 274
           + SN+D R R+     + IDLN  P  +KN
Sbjct: 438 ASSNQDYRVRVLSRNFKCIDLNNVPEIIKN 467


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = -3

Query: 628 LPSAVWRLNLLFISRHKSMSRYNTLCNLWIIYLEEQALLSSFRIFL 491
           +  ++WR  ++++SR  + ++Y T  +LW +    Q  + + R++L
Sbjct: 193 MKDSLWRAMIIYVSRQVTSNKY-TKFHLWCV----QKRIGNIRMYL 233


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 407 ALLWLPLQLYVPNWLDASSLACEPNN 330
           AL WL    Y   W+   SL  EPNN
Sbjct: 55  ALDWLKQGKYSSEWIAMGSLNEEPNN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,538
Number of Sequences: 5004
Number of extensions: 45952
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)