Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24o09
(672 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein. 316 5e-86
BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a, sub... 316 5e-86
BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a, sub... 316 5e-86
AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein. 316 5e-86
L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein. 313 3e-85
U69645-1|AAB09561.1| 273|Homo sapiens zinc finger protein protein. 33 1.2
BC022842-1|AAH22842.1| 273|Homo sapiens zinc finger protein 32 ... 33 1.2
AL645634-4|CAH73489.1| 273|Homo sapiens zinc finger protein 32 ... 33 1.2
AK023904-1|BAB14719.1| 229|Homo sapiens protein ( Homo sapiens ... 32 2.1
BC056668-1|AAH56668.1| 199|Homo sapiens zinc finger, matrin typ... 31 2.8
AK055683-1|BAB70983.1| 199|Homo sapiens protein ( Homo sapiens ... 31 2.8
BC011584-1|AAH11584.1| 348|Homo sapiens CCDC16 protein protein. 30 6.6
BC002913-1|AAH02913.2| 366|Homo sapiens CCDC16 protein protein. 30 6.6
AK055707-1|BAB70992.1| 372|Homo sapiens protein ( Homo sapiens ... 30 6.6
BC007775-1|AAH07775.1| 294|Homo sapiens zinc finger protein 346... 30 8.7
AK131469-1|BAD18614.1| 319|Homo sapiens protein ( Homo sapiens ... 30 8.7
AF083340-1|AAD52018.1| 294|Homo sapiens double-stranded RNA-bin... 30 8.7
>BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein.
Length = 481
Score = 316 bits (776), Expect = 5e-86
Identities = 145/181 (80%), Positives = 155/181 (85%)
Frame = +2
Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
MDFQ+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFVKIGRPGYRVT 487
TLHNNEGSYLAHTQGKKHQ PEK ++E KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 488 KQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIA 667
KQ+D E GQQSLLFQ+DYPEIAEG++PRHRFMSAYEQ+IEPPDRRWQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 668 F 670
F
Sbjct: 181 F 181
>BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 316 bits (776), Expect = 5e-86
Identities = 145/181 (80%), Positives = 155/181 (85%)
Frame = +2
Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
MDFQ+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFVKIGRPGYRVT 487
TLHNNEGSYLAHTQGKKHQ PEK ++E KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 488 KQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIA 667
KQ+D E GQQSLLFQ+DYPEIAEG++PRHRFMSAYEQ+IEPPDRRWQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 668 F 670
F
Sbjct: 181 F 181
>BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 316 bits (776), Expect = 5e-86
Identities = 145/181 (80%), Positives = 155/181 (85%)
Frame = +2
Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
MDFQ+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFVKIGRPGYRVT 487
TLHNNEGSYLAHTQGKKHQ PEK ++E KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 488 KQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIA 667
KQ+D E GQQSLLFQ+DYPEIAEG++PRHRFMSAYEQ+IEPPDRRWQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 668 F 670
F
Sbjct: 181 F 181
>AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein.
Length = 464
Score = 316 bits (776), Expect = 5e-86
Identities = 145/181 (80%), Positives = 155/181 (85%)
Frame = +2
Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
MDFQ+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFVKIGRPGYRVT 487
TLHNNEGSYLAHTQGKKHQ PEK ++E KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 488 KQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIA 667
KQ+D E GQQSLLFQ+DYPEIAEG++PRHRFMSAYEQ+IEPPDRRWQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 668 F 670
F
Sbjct: 181 F 181
>L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein.
Length = 464
Score = 313 bits (769), Expect = 3e-85
Identities = 144/181 (79%), Positives = 154/181 (85%)
Frame = +2
Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
MDFQ+RPGGKTG GGVAS SESNRDRRE LRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRREPLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFVKIGRPGYRVT 487
TLHNNEGSYLAHTQGKKHQ PEK ++E KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 488 KQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIA 667
KQ+D E GQQSLLFQ+DYPEIAEG++PRHRFMSAYEQ+IEPPDRRWQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 668 F 670
F
Sbjct: 181 F 181
>U69645-1|AAB09561.1| 273|Homo sapiens zinc finger protein protein.
Length = 273
Score = 32.7 bits (71), Expect = 1.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 170 GVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAH 343
G +SW N RRE+L Q + ++ L +D ++ + YEC+ C +GS H
Sbjct: 40 GSSSWDIQNSFRREKLEQKSPDSKTLQEDSPGVRQRV--YECQECGKSFRQKGSLTLH 95
>BC022842-1|AAH22842.1| 273|Homo sapiens zinc finger protein 32
protein.
Length = 273
Score = 32.7 bits (71), Expect = 1.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 170 GVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAH 343
G +SW N RRE+L Q + ++ L +D ++ + YEC+ C +GS H
Sbjct: 40 GSSSWDIQNSFRREKLEQKSPDSKTLQEDSPGVRQRV--YECQECGKSFRQKGSLTLH 95
>AL645634-4|CAH73489.1| 273|Homo sapiens zinc finger protein 32
protein.
Length = 273
Score = 32.7 bits (71), Expect = 1.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 170 GVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAH 343
G +SW N RRE+L Q + ++ L +D ++ + YEC+ C +GS H
Sbjct: 40 GSSSWDIQNSFRREKLEQKSPDSKTLQEDSPGVRQRV--YECQECGKSFRQKGSLTLH 95
>AK023904-1|BAB14719.1| 229|Homo sapiens protein ( Homo sapiens
cDNA FLJ13842 fis, clone THYRO1000793. ).
Length = 229
Score = 31.9 bits (69), Expect = 2.1
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 188 ESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 364
+ + ++ R LE + D ++ +Y C +C N+ Y AH +G KHQ
Sbjct: 165 DGKKHKKNAARVALLEQLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQ 223
>BC056668-1|AAH56668.1| 199|Homo sapiens zinc finger, matrin type 2
protein.
Length = 199
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 194 NRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 364
+RD + L +TI + K ++ +G Y C +C + + ++L H GKKHQ
Sbjct: 51 HRDYKVDLESKLGKTIVITKTT--PQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQ 105
>AK055683-1|BAB70983.1| 199|Homo sapiens protein ( Homo sapiens
cDNA FLJ31121 fis, clone IMR322000742, weakly similar to
HYPOTHETICAL ZINC FINGER PROTEIN ZK686.4 IN CHROMOSOME
III. ).
Length = 199
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 194 NRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 364
+RD + L +TI + K ++ +G Y C +C + + ++L H GKKHQ
Sbjct: 51 HRDYKVDLESKLGKTIVITKTT--PQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQ 105
>BC011584-1|AAH11584.1| 348|Homo sapiens CCDC16 protein protein.
Length = 348
Score = 30.3 bits (65), Expect = 6.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 251 KDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 364
+ P+ N LG C LC T +E + H GK+H+
Sbjct: 15 ESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHR 52
>BC002913-1|AAH02913.2| 366|Homo sapiens CCDC16 protein protein.
Length = 366
Score = 30.3 bits (65), Expect = 6.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 251 KDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 364
+ P+ N LG C LC T +E + H GK+H+
Sbjct: 33 ESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHR 70
>AK055707-1|BAB70992.1| 372|Homo sapiens protein ( Homo sapiens
cDNA FLJ31145 fis, clone IMR322001332, weakly similar to
NEUROFILAMENT TRIPLET M PROTEIN. ).
Length = 372
Score = 30.3 bits (65), Expect = 6.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 251 KDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 364
+ P+ N LG C LC T +E + H GK+H+
Sbjct: 39 ESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHR 76
>BC007775-1|AAH07775.1| 294|Homo sapiens zinc finger protein 346
protein.
Length = 294
Score = 29.9 bits (64), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 290 ECKLCLTLHNNEGSYLAHTQGKKH 361
+CK+C L +E LAH Q KKH
Sbjct: 74 QCKVCCALLISESQKLAHYQSKKH 97
>AK131469-1|BAD18614.1| 319|Homo sapiens protein ( Homo sapiens
cDNA FLJ16637 fis, clone TESTI4025547, highly similar
to Homo sapiens double-stranded RNA-binding zinc finger
protein JAZ (JAZ). ).
Length = 319
Score = 29.9 bits (64), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 290 ECKLCLTLHNNEGSYLAHTQGKKH 361
+CK+C L +E LAH Q KKH
Sbjct: 99 QCKVCCALLISESQKLAHYQSKKH 122
>AF083340-1|AAD52018.1| 294|Homo sapiens double-stranded
RNA-binding zinc finger protein JAZ protein.
Length = 294
Score = 29.9 bits (64), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 290 ECKLCLTLHNNEGSYLAHTQGKKH 361
+CK+C L +E LAH Q KKH
Sbjct: 74 QCKVCCALLISESQKLAHYQSKKH 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,052,722
Number of Sequences: 237096
Number of extensions: 1671861
Number of successful extensions: 3557
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3550
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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