Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o09
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical pr...   295   2e-80
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van gogh/...    28   6.9  
U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van gogh/...    28   6.9  
Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    27   9.2  

>Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical
           protein F11A10.2 protein.
          Length = 222

 Score =  295 bits (724), Expect = 2e-80
 Identities = 132/181 (72%), Positives = 149/181 (82%)
 Frame = +2

Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
           MDFQNR GGKTG GGVAS +++  DRRERLRQLALETIDL KDPYFM+NH+G+YECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHIGTYECKLCL 60

Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFVKIGRPGYRVT 487
           TLHNNEGSYLAHTQGKKHQ                   P+K  +E KKFVKIGRPGY+VT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQPFLPAPQKAAVETKKFVKIGRPGYKVT 120

Query: 488 KQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIA 667
           K++DP  GQQ+LLFQ+DYPEIA+G+ PRHRFMSAYEQKI+PPD+RWQYLLFAAEPYETI 
Sbjct: 121 KERDPGAGQQALLFQIDYPEIADGIAPRHRFMSAYEQKIQPPDKRWQYLLFAAEPYETIG 180

Query: 668 F 670
           F
Sbjct: 181 F 181


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 269 KNHLGSYECKLCLTLHNNEGSYLAHTQGKKH 361
           KN L SY C LC      + +Y AH +G KH
Sbjct: 13  KNKL-SYRCDLCDVTCTGQDTYSAHVRGGKH 42


>Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical
           protein C01F6.5 protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 137 QNRPGGK-TGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMK 271
           QN   GK TGG G     ++ + +RE   +  LE +D   D Y  K
Sbjct: 177 QNVKSGKPTGGAGAQKKLKAKKPKREAQPKKTLEELDAELDVYMSK 222


>U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform b protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 545 EIAEGVIPRHRFMSAYEQKIEPPDRRW 625
           EI E  IPR   +++  QKI PP+  W
Sbjct: 37  EIGEPFIPRFSAIASEGQKIAPPNEDW 63


>U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform a protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 545 EIAEGVIPRHRFMSAYEQKIEPPDRRW 625
           EI E  IPR   +++  QKI PP+  W
Sbjct: 37  EIGEPFIPRFSAIASEGQKIAPPNEDW 63


>Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical
           protein Y48E1B.4 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 134 FQNRPGGKTGGGGVASWSESNRDRRERLRQLALE 235
           F+N  GG+ GGG +  W+ + R +R+ L   ++E
Sbjct: 112 FENS-GGENGGGILKIWTVNERSKRKMLECFSVE 144


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 173 VASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAH 343
           +  W+E+N +   RL  + LE ++    P + K+   +YE  L +T+ N E   ++H
Sbjct: 571 IIGWAETNEEVHNRLMIMCLELMN-RMPPVYTKSEEDTYE--LTVTI-NGESCRISH 623


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,559,884
Number of Sequences: 27780
Number of extensions: 260288
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)