Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o06
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    55   1e-08
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    27   3.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.8  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    26   5.8  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   7.7  

>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 27/80 (33%), Positives = 38/80 (47%)
 Frame = +2

Query: 350 EGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFI 529
           +G + LT  R++Y +K      + F  P   L+D  + QP F AN   G V   PNG   
Sbjct: 49  KGLLCLTNQRLVYIAKDTDCDFKDFQSPVANLKDTKLNQPFFGANYYSGTVMPVPNGGIP 108

Query: 530 GEVKFKLTFKSGGAIEYGQA 589
            E + KL F  GG   + +A
Sbjct: 109 CEAEVKLQFNEGGIFNFVEA 128


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 295 VRKQDDVILQFWSLLRLLKNLVNEHKQKNFMEGLG 191
           ++KQDD   ++W++     +++  H+ +N    LG
Sbjct: 1   MQKQDDFSFKYWTIKVQRGSILKSHEMENLQSTLG 35


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 228 LTKFFNNLKRLQNCNITSSCFLTMCQLNSMGMIHQSLRGSRRDGCTSL 371
           LT F N LK   N  +  +CF T   L++    ++SL     +  TSL
Sbjct: 321 LTSFVNGLKS-SNAEVRRNCFQTFKDLSANASDNESLSRVASELITSL 367


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 329 PEFK-GIKEGRMYLTTHRMIYNSKKNTDAMRSFSFP 433
           PEF+ G+ EGR   +    +Y  +K  + ++SF+ P
Sbjct: 271 PEFQLGVWEGRNMYSFFAFMYVDEKEWEKLKSFNVP 306


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 301 HIVRKQDDV-ILQFWSLLRLLKNLVNEHKQKNFMEGLGQN 185
           H + +QD V ++   SLL    NL++ HK    +E LG N
Sbjct: 38  HSILEQDSVQLISHQSLLPAGDNLISLHKSLVEIESLGGN 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,560
Number of Sequences: 5004
Number of extensions: 62657
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)