Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24o06
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0710 + 19660895-19661004,19661571-19661682,19661808-196618... 38 0.006
11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746 29 4.5
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 4.5
09_04_0755 - 19948942-19949088,19949249-19949396,19949512-199496... 29 4.5
08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124 29 4.5
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770... 29 4.5
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 28 6.0
03_04_0095 + 17266595-17266741,17267235-17267807 28 6.0
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019... 28 7.9
>09_04_0710 +
19660895-19661004,19661571-19661682,19661808-19661879,
19661964-19662184,19662272-19662377
Length = 206
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Frame = +2
Query: 305 VEFYGNDTPEFKG---IKEGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMF 475
VEF+ + P G +G +YL+ RM++ + K +F P + + QP+F
Sbjct: 28 VEFHVDKIPSAPGGHAKTKGTIYLSNIRMVFVASKPVGNFFAFDMPLLYVHGEKFNQPIF 87
Query: 476 SANCIKGKVR----AQPNGNFIGEVKFKLTFKSGG 568
N I G V N FK+ FK GG
Sbjct: 88 HCNNISGFVEPVVPENQNRALYSTHTFKILFKEGG 122
>11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746
Length = 272
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 284 LFSDNVSVEFYGNDTPEFKGIKEGRMYLTTH 376
+ D V V+ YG+D P F K GR+YL ++
Sbjct: 138 VMKDEVEVQGYGSDDPVFS--KHGRLYLYSY 166
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 570 APPDLKVSLNLTSPIKLPLGWARTL 496
APP V+L L+ +K P GW +TL
Sbjct: 913 APPRYLVALELSGMLKKPPGWIKTL 937
>09_04_0755 -
19948942-19949088,19949249-19949396,19949512-19949648,
19949933-19949995,19950175-19950288,19951410-19951514,
19951794-19951853,19952604-19952639,19953176-19953467,
19954168-19954253,19954641-19954901
Length = 482
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 494 GKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQ 586
G+ RA P G GE+ F SGG I +G+
Sbjct: 69 GRRRASPAGALSGEMPASAAFVSGGIISWGK 99
>08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124
Length = 429
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 165 YEIMIC*FC-PNPSIKFFCLCSLTKFFNNLKRLQNCNITSSCFLTMCQLNSM 317
Y +M FC + +++ F L FFN+ +L I + F MCQ NS+
Sbjct: 298 YLVMKIEFCGDHDTLEPFPEVDLVDFFNSHPKLIKFEIHGAMFAAMCQKNSL 349
>03_06_0691 +
35576319-35576702,35576803-35576885,35576972-35577012,
35577974-35578018,35578217-35578371,35579116-35579265,
35579386-35579481,35579738-35579854,35579969-35580088,
35580170-35580262,35580351-35580467,35580815-35580931,
35581089-35581151,35581238-35581399
Length = 580
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = -3
Query: 373 SSEVHPSL-LDPLKLWC--IIPIEFN*HIVRKQDDV----ILQFWSLLRLLKNL 233
+SEV SL LDP KLWC +I E + H+V + + + +LQ S++ L+ N+
Sbjct: 445 TSEVSISLTLDPSKLWCRELIQQELD-HVVEELEKIAVVHLLQHRSIISLIGNV 497
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 585 CPYSIAPPDLKVSLNLTS-----PIKLPLGWARTLPFIQLAEN 472
C YS + P L +LNL+S P+ L G ++L ++ L+ N
Sbjct: 445 CGYSSSDPALVTALNLSSSVLIGPVNLSFGDLKSLQYLDLSNN 487
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 560 SGGAIEYGQAMLKAAHLGE*K*CLPNHN*ESQRNREPKRH 679
SG + G + A GE C H + QR REPKRH
Sbjct: 170 SGSGVFIGGGPREVAQ-GETSSCARQHLLDGQRRREPKRH 208
>05_03_0418 +
13700855-13700942,13701602-13701728,13701845-13701916,
13702079-13702153,13702290-13702361,13702477-13702638,
13702726-13702800,13702880-13702951,13703040-13703108,
13703196-13703264,13703355-13703429,13703522-13703593,
13703668-13703737,13703920-13704361,13704442-13704573,
13704664-13704803,13704910-13705129,13705301-13705536,
13705732-13706256
Length = 930
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 495 VKFVPNLMATLLVRSNSSLPSNQEVLLSMD 584
VKF+P+L A L + NS P+N ++ S D
Sbjct: 429 VKFLPSLQANLSSKLNSCTPNNLGLVYSND 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,694,265
Number of Sequences: 37544
Number of extensions: 355260
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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