Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o06
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical pr...   107   6e-24
Z47808-4|CAA87772.1|  235|Caenorhabditis elegans Hypothetical pr...    88   6e-18
U70855-5|AAB09160.2|  886|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U55857-10|AAA98035.2|  895|Caenorhabditis elegans Hypothetical p...    28   5.4  

>U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical
           protein C18B2.4 protein.
          Length = 296

 Score =  107 bits (258), Expect = 6e-24
 Identities = 46/111 (41%), Positives = 77/111 (69%)
 Frame = +2

Query: 278 IILFSDNVSVEFYGNDTPEFKGIKEGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVT 457
           I+L++ NV ++F   + P FK  K G +YLT+HR+I+ ++   D  +SF+ PF +++DV 
Sbjct: 22  ILLYTTNVKLKFEKYNVPAFKSTKSGALYLTSHRIIFMNESKKDEFKSFAMPFNSVRDVK 81

Query: 458 VEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQAMLKAAHL 610
           +EQP+ + N +KG V+  P GNF G  +++L+F  GG IE+G+A+L+AA +
Sbjct: 82  LEQPLLTPNYLKGWVQPMPGGNFDGCPEWRLSFPKGGCIEFGEALLRAADM 132


>Z47808-4|CAA87772.1|  235|Caenorhabditis elegans Hypothetical
           protein D2013.6 protein.
          Length = 235

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 41/108 (37%), Positives = 67/108 (62%)
 Frame = +2

Query: 278 IILFSDNVSVEFYGNDTPEFKGIKEGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVT 457
           I++F+  V +    ++    +G + G +YLT+HR+I+      D ++SF  PF ++QDV 
Sbjct: 22  IVIFAQGVVMTLGTSENENLEGRRTGTIYLTSHRIIFMPDPG-DWLKSFEIPFNSMQDVN 80

Query: 458 VEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQAMLKA 601
           + QP+F AN + G   A   G   GEVK+++TF  GG IE+GQ++L+A
Sbjct: 81  LNQPIFGANYLCGIASAVQGGQMRGEVKWRMTFNRGGCIEFGQSLLQA 128


>U70855-5|AAB09160.2|  886|Caenorhabditis elegans Hypothetical
           protein K08F11.2 protein.
          Length = 886

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 284 LFSDNVSVEFYGNDTPEFKGIKEG----RMYLTTHRMIYNS-KKNTDAMRSFS 427
           L+S + SV  + N+TP  KGI+E     RM L     I +S  +N DA+ S S
Sbjct: 129 LYSSSDSVGVFSNETPYVKGIREDLSRERMRLLEVDSILDSISENLDAILSSS 181


>U55857-10|AAA98035.2|  895|Caenorhabditis elegans Hypothetical
           protein K08D10.1 protein.
          Length = 895

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 284 LFSDNVSVEFYGNDTPEFKGIKEG----RMYLTTHRMIYNS-KKNTDAMRSFS 427
           L+S + SV  + N+TP  KGI+E     RM L     I +S  +N DA+ S S
Sbjct: 129 LYSSSDSVGVFSNETPYVKGIREDLSRERMRLLEVDSILDSISENLDAILSSS 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,823,747
Number of Sequences: 27780
Number of extensions: 340245
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)