Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o02
         (132 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   1.4  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    23   5.5  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    23   5.5  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
 Frame = +1

Query: 49  ICLVGY---LVYAGHLNNELQE 105
           +CL+GY   LVYAG+  NE ++
Sbjct: 266 LCLLGYEFFLVYAGYTTNESEK 287


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 28  NFWATFSICLVGYLVYAG 81
           NF+  FS+ L G   YAG
Sbjct: 186 NFYRGFSVTLTGIFPYAG 203


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 22  TMNFWATFSICLVGYLVYAGHLNNELQEIKSIL 120
           TM FWA FS+ ++   +  G     L+EI+S+L
Sbjct: 345 TMAFWAIFSLPMIQKALPKG----VLEEIQSLL 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,730
Number of Sequences: 5004
Number of extensions: 6789
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)