Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o02
         (132 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0624 - 8202783-8203140,8203242-8203594,8203697-8203872,820...    25   8.5  
02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226     25   8.5  

>04_01_0624 -
           8202783-8203140,8203242-8203594,8203697-8203872,
           8203993-8204230,8208308-8208748
          Length = 521

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 112 ILFLVARYSSVPRTPNNPPNK 50
           ++  + R+S VP  P  PP K
Sbjct: 154 VILCIGRFSGVPNIPTFPPGK 174


>02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226
          Length = 568

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 31  FWATFSICLVGYLVYAGHLNNELQEIKSIL 120
           FW   ++C + ++VY+G   N   ++K++L
Sbjct: 540 FWMLAAMCTLNFVVYSGFAKN--YKLKTVL 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,939
Number of Sequences: 37544
Number of extensions: 36438
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 14,793,348
effective HSP length: 24
effective length of database: 13,892,292
effective search space used: 263953548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)