Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o02
         (132 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05138-1|CAA28784.1|  376|Drosophila melanogaster even skipped p...    27   2.7  
M14767-1|AAA28522.1|  376|Drosophila melanogaster protein ( D.me...    27   2.7  
AE013599-983|AAF58865.1|  376|Drosophila melanogaster CG2328-PA ...    27   2.7  
U32091-1|AAB05362.1|   58|Drosophila melanogaster homeodomain tr...    27   4.8  
U32090-1|AAB05361.1|   58|Drosophila melanogaster homeodomain tr...    27   4.8  
U32089-1|AAB05360.1|   58|Drosophila melanogaster homeodomain tr...    27   4.8  
U32088-1|AAB05359.1|   58|Drosophila melanogaster homeodomain tr...    27   4.8  
U32087-1|AAB05358.1|   58|Drosophila melanogaster homeodomain tr...    27   4.8  

>X05138-1|CAA28784.1|  376|Drosophila melanogaster even skipped
           protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLSKS 14
           L++ L+A     P+TP   PN+C + P +SL+ S
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLNGS 59


>M14767-1|AAA28522.1|  376|Drosophila melanogaster protein (
           D.melanogaster even-skipped (eve) gene containing homeo
           box. ).
          Length = 376

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLSKS 14
           L++ L+A     P+TP   PN+C + P +SL+ S
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLNGS 59


>AE013599-983|AAF58865.1|  376|Drosophila melanogaster CG2328-PA
           protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLSKS 14
           L++ L+A     P+TP   PN+C + P +SL+ S
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLNGS 59


>U32091-1|AAB05362.1|   58|Drosophila melanogaster homeodomain
           transcription factor protein.
          Length = 58

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLS 20
           L++ L+A     P+TP   PN+C + P +SL+
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLN 57


>U32090-1|AAB05361.1|   58|Drosophila melanogaster homeodomain
           transcription factor protein.
          Length = 58

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLS 20
           L++ L+A     P+TP   PN+C + P +SL+
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLN 57


>U32089-1|AAB05360.1|   58|Drosophila melanogaster homeodomain
           transcription factor protein.
          Length = 58

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLS 20
           L++ L+A     P+TP   PN+C + P +SL+
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLN 57


>U32088-1|AAB05359.1|   58|Drosophila melanogaster homeodomain
           transcription factor protein.
          Length = 58

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLS 20
           L++ L+A     P+TP   PN+C + P +SL+
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLN 57


>U32087-1|AAB05358.1|   58|Drosophila melanogaster homeodomain
           transcription factor protein.
          Length = 58

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLS 20
           L++ L+A     P+TP   PN+C + P +SL+
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLN 57


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,672,839
Number of Sequences: 53049
Number of extensions: 69224
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 24,988,368
effective HSP length: 24
effective length of database: 23,715,192
effective search space used: 450588648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)