Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o02
         (132 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    27   2.4  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    27   2.4  
U80029-2|AAB37582.1|  150|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    25   9.8  

>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 22  TMNFWATFSICLVGYLVYAGHLNNELQE--IKSIL 120
           T+  WA   I +  YL  A  +NN L+   +KSIL
Sbjct: 146 TVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSIL 180


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 22  TMNFWATFSICLVGYLVYAGHLNNELQE--IKSIL 120
           T+  WA   I +  YL  A  +NN L+   +KSIL
Sbjct: 146 TVGMWAAGQIIVTCYLYVAEQMNNRLRREFVKSIL 180


>U80029-2|AAB37582.1|  150|Caenorhabditis elegans Hypothetical
           protein T20D4.15 protein.
          Length = 150

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 107 ISCSSLFKCPAYTK*PTKQMLNVAQKF 27
           I+C +   CP YTK   KQ + +  K+
Sbjct: 30  INCMTALTCPPYTKDAKKQGIELTGKY 56


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 10  CTISTMNFWATFSICLVGYLVYAGHLNNE 96
           CT +  +FW T  +C    + Y  + NNE
Sbjct: 33  CTYTLFSFWITLKMC----IFYLNNKNNE 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,976
Number of Sequences: 27780
Number of extensions: 36751
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 24
effective length of database: 12,073,478
effective search space used: 229396082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)