Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24o02
         (132 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.2  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 40  TFSICLVGYLVYA 78
           T++  +VGYL+Y+
Sbjct: 154 TYAASVVGYLLYS 166


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 4/9 (44%), Positives = 8/9 (88%)
 Frame = +1

Query: 49  ICLVGYLVY 75
           +C+ GY++Y
Sbjct: 541 LCIPGYMIY 549


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 4/9 (44%), Positives = 8/9 (88%)
 Frame = +1

Query: 49  ICLVGYLVY 75
           +C+ GY++Y
Sbjct: 594 LCIPGYMIY 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,886
Number of Sequences: 438
Number of extensions: 458
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used:  2580789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)