Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24n22
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197...    28   8.6  
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     28   8.6  
01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234           28   8.6  

>10_08_0426 - 17817975-17818582,17819068-17819209,17819648-17819745,
            17820070-17821897,17822331-17822738,17822891-17822943,
            17823461-17823877,17824401-17824605
          Length = 1252

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 483  YGTVALTNVLTYRVKFADRYAEH*FIFFQISNMQ 382
            YG VA T  +T R+K  ++ AE+ + F   SN +
Sbjct: 1191 YGNVAATAQVTRRIKSGEQSAENLWFFLGFSNWE 1224


>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/70 (34%), Positives = 29/70 (41%)
 Frame = -3

Query: 492 ADVYGTVALTNVLTYRVKFADRYAEH*FIFFQISNMQTVLHSNYTTEVYRYLMININSLV 313
           A V  T+A   VL    K   R  +    FFQ S +     SNYT  +  YL I  N   
Sbjct: 54  AAVDDTLAAGQVLAVGEKLVSRNGKFALGFFQPSAIAISKSSNYTNALGWYLAIWFN--- 110

Query: 312 LRIPV*DLTW 283
            +IPV    W
Sbjct: 111 -KIPVFTTVW 119


>01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234
          Length = 487

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 348 TLLLYNLSVVLSAYLIFEKI*INVPHICPRIL-HDM*ARLLVRPFRKHPHSASI 506
           TLL+Y  + V S    F+ +  N P   P    HD+       P R+HPH  ++
Sbjct: 333 TLLMYYANFVSSPEGYFQTVLCNAPRFVPTAANHDLHHIQWDTPPRQHPHPLAL 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,815
Number of Sequences: 37544
Number of extensions: 299481
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)