Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24n19
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.1  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   2.8  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    26   4.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   4.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 144 IKIVYKCIR**MQS*SCNVLL-AFKCALNVKKITRCQN 34
           IK ++KCI+  + + S NVLL A +CA  +   +R +N
Sbjct: 172 IKEIWKCIKSNLNTSSTNVLLSALRCAYYILGSSRLRN 209



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 247 LTFIEYNRILFILQFYYTFII--TKCLKHIFKSYYLHK 140
           L+F+EYN+ILF        II    CLK  +K++ L K
Sbjct: 611 LSFLEYNKILFTPDVRKRVIIFLNNCLK-FYKAFSLTK 647


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -3

Query: 223 ILFILQFYYTFIITKC---LKHIFKSY 152
           +LFIL  YY F    C   +KHIFK +
Sbjct: 154 LLFILMRYYDFWTKACKDGIKHIFKKW 180


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 247 LTFIEYNRILFILQFYYTFIITKCLKHIFKSY 152
           L  +  N++L I    Y F  T   KH F+SY
Sbjct: 3   LVILSLNKLLTISYLLYRFPNTNQTKHCFQSY 34


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 345 CIVLFFGK*GICLLLNY*KLSNKAFFCLSTNFLVYNSIL 461
           C  + FGK G C+ L         F+C+STN LV + +L
Sbjct: 120 CFFIRFGKLGHCVYL---------FYCISTNVLVSSLLL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,348
Number of Sequences: 5004
Number of extensions: 38788
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)