Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24n19
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U80029-8|ABC71800.1|  166|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 414 AFFCLSTNFLVYNSILNLKILWVVFHPSKSSDSPF 518
           A + + +++L+  ++LN+ I++ VFH +   D+ F
Sbjct: 33  AMYGMQSSYLIVGAVLNVMIVYTVFHGNSYRDNSF 67


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -3

Query: 232 YNRILFILQFYYTFI 188
           Y++ILFIL FY++FI
Sbjct: 2   YDKILFILSFYFSFI 16


>U80029-8|ABC71800.1|  166|Caenorhabditis elegans Hypothetical
           protein T20D4.20 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 408 C*VSNNLATDKYPIYQKKGQCKLTPHSFRIWR 313
           C + N L+TD  P   K G  K  P  F+ W+
Sbjct: 74  CEIMNFLSTDFNPCLAKLGNLKPVPECFKEWK 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,999,246
Number of Sequences: 27780
Number of extensions: 217224
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)