Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24n15
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 31 0.20
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 30 0.36
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 29 0.82
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 26 4.4
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 5.8
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 5.8
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 5.8
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 7.7
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 7.7
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 30.7 bits (66), Expect = 0.20
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +1
Query: 286 PILDMSENGQCQQLQEWEATRLQPSLSAALGK------SPASDVKQVLKSSLEHVNGLLE 447
P+L M EN + E T L SL LGK S D+ +VL++ H L E
Sbjct: 965 PLLQMLENNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRHHYQDLPE 1024
Query: 448 GHQYVLGD 471
+ VLGD
Sbjct: 1025 SVRRVLGD 1032
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +1
Query: 418 SLEHVNGLLEGHQYVLGDKISAADISIWSTLYPLTHNDDLREQYLKELGNIRRW 579
SL+ N L++ Y++GD+ + AD+ + +L + N + E+ KEL ++ R+
Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADL-FFGSLLRIFFNSIIDEKTRKELPHLTRY 193
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 28.7 bits (61), Expect = 0.82
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 223 LLEVDPELRFFSSNAAVQY-LFPILDMSENGQCQQLQEWEATRLQPSLSAALG 378
LL+V P+ S + V+Y L+ D +N + + W A QP L +ALG
Sbjct: 246 LLDVRPDKIAPSLGSIVEYMLYSTQDSDQNVALEACEFWLAIAEQPDLCSALG 298
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 259 SNAAVQYLFPILDMSENGQCQQLQEWEATRLQPSLSAALGKSPASDVKQVLKSS 420
S A++ L P+L S +G + EW A + + LG +P + +L S+
Sbjct: 306 SRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQSILLTST 359
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 529 DDLREQYLKELGNI-RRWSDAIGGAK 603
DDL QY K++G++ ++ + +GGA+
Sbjct: 1060 DDLYRQYQKKIGSVLTQFDNTVGGAR 1085
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 190 DDVFAGPRQLPLLEVDPELRFFSSNAAVQYLFPI 291
+++F G + + LE+ EL N++ YL P+
Sbjct: 434 ENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPV 467
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 538 REQYLKELGNIRRWSDAIGGAKSVQEAVRQWG 633
R+ +KELG W GG V E + WG
Sbjct: 555 RKMMVKELGYFHVWFSIDGGYGHVVEDEKAWG 586
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 7.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Frame = +1
Query: 451 HQYVLGDKISAADIS------IWSTLYPLTHNDDL-REQ------YLKELGNIRRWSDAI 591
+ Y GD I+ A I+ W T +P+ H DL R Q Y++ GN+R W++ I
Sbjct: 289 NDYKSGDAIAQASITGTLPQAPWIT-FPVPHRADLSRTQKSELFPYIENQGNLRDWNEEI 347
Query: 592 GGAKSV 609
+ +
Sbjct: 348 QSTREM 353
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 449 ATNTFSG----TKSQRPTSQYGARYIPLLTMMISENSI*RSS 562
ATNT SG + S +S+Y + IP+ T+ S++ I SS
Sbjct: 70 ATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSDSFIPSSS 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,968
Number of Sequences: 5004
Number of extensions: 54891
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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