Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24n09
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   0.48 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   0.84 
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   0.84 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   1.9  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    24   4.5  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    24   4.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    23   7.9  
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.9  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    23   7.9  

>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 15  YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 143
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 265 SXHMTRFTNDSNELVYSLWMFMIGQ 191
           S H  +F ND  E  Y  W F+  Q
Sbjct: 202 SSHTYKFVNDKGEFYYCKWHFITNQ 226



 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 286 KRWVCRSSXHMTRFTNDSNELVYSLWMFMIGQPP 185
           ++WV + + HM   T+   E   + W  ++G+ P
Sbjct: 408 EKWVGQVTYHMDEITDVDFEQPRAFWQNVLGKKP 441


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 GMNNEYRISLAKKGGGCPIMNIHS 215
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 122 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 24
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 9   DVYLVANLKPTRPNRCYKFLAQHALRWEED 98
           ++ L+  L P   N+      QH + WEED
Sbjct: 176 NIELLRPLLPYYKNQILNTAKQHGIAWEED 205


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 282 DGFVEVLPI*RGSQTTRTSWCTRCGCS 202
           DGFV++LP  R     + S  TR G S
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGIS 273


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 10  TCTSSPTSNPHAPTGATSSSL 72
           T ++SPTS+    + ATSSSL
Sbjct: 99  TTSASPTSSSLTSSSATSSSL 119


>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 286 KRWVCRSSXHMTRFTNDSNELVYSLWMF 203
           ++WV  SS  +    N   +L +++WMF
Sbjct: 13  QQWVETSSLELVDSVNCVADLCHAIWMF 40


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 93  EDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFES 239
           E ++    ++I   S +   +  R+ +A  GGG P M   +   N+F++
Sbjct: 101 ESFISKTGLKIDTKSVLNDTDGPRLGIAISGGGFPAMLTGAGAINAFDA 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,938
Number of Sequences: 5004
Number of extensions: 25692
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)