Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24n09
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357... 28 1.7
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 27 4.0
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 27 4.0
09_06_0122 + 20990754-20991263,20992635-20992748 26 5.2
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 26 5.2
06_02_0144 - 12268981-12269628 26 5.2
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 26 5.2
01_05_0783 + 25183361-25185628 26 5.2
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638... 26 6.9
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 26 6.9
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495... 26 6.9
01_05_0663 - 24119355-24120101 26 6.9
12_02_0749 - 22758317-22760407 25 9.2
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 25 9.2
09_02_0304 + 7118372-7118959 25 9.2
09_02_0294 - 7032860-7033091,7033471-7033622 25 9.2
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 25 9.2
>01_07_0242 +
42234217-42234320,42234708-42235029,42235377-42235778,
42235921-42236265,42236785-42236854,42237098-42237173,
42237309-42237459
Length = 489
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 108 HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 218
HE ++++ +P G EY +A+ GG PI I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 197 NHEHPQRVHQLVRVVCEPRHMGRTSTNPSFTSAQTL 304
N + VH+L V EP+ +T+ +P+ TS L
Sbjct: 461 NDDDGTGVHKLATTVFEPKRDSKTAKHPAITSLPLL 496
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 10 TCTSSPTSNPHAPTGATSSS--LNTLLGGKKTTC 105
TC+S+PT P P AT S + +LGG C
Sbjct: 537 TCSSNPTPPPSPPFIATPSPELIQNVLGGFSERC 570
>09_06_0122 + 20990754-20991263,20992635-20992748
Length = 207
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 7 WTCTSSPTSNPHAPTGATSSSLN 75
W TSSP+++P P G S++L+
Sbjct: 8 WANTSSPSASPPRPRGFISTALS 30
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 7 WTCTSSPTSNPHAPTGATSSSLNTLLGG 90
WTCTS+ T++ T +SS ++ + G
Sbjct: 651 WTCTSAATASASPATAKRTSSTSSSVNG 678
>06_02_0144 - 12268981-12269628
Length = 215
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 13 CTSSPTSNPHAPTGATSSS 69
C SPT PHAP A S+S
Sbjct: 18 CRFSPTFRPHAPPPAPSNS 36
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 188 RLPNHEHPQRVHQLVRVV-CEPRHMGRTSTNPSFTSAQTL 304
RLP++ +P R+ + +R V + ++ G ST+ ++++
Sbjct: 98 RLPDNSNPDRIREFIRAVYVDKKYAGGKSTDKPVNDSESV 137
>01_05_0783 + 25183361-25185628
Length = 755
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 122 SDYFVGHVVFFPPKSVLSEELVAPVGA 42
SD+ +GH + PPKS+ +LV V A
Sbjct: 528 SDFKLGHYMKIPPKSMFLVKLVGTVVA 554
>06_01_0842 +
6383033-6383430,6383548-6383627,6383974-6384085,
6384355-6384454,6384682-6384744,6385857-6386011,
6386109-6386286,6386787-6386954
Length = 417
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 194 PNHEHPQRVHQLVRVVCEPRHMGRTSTNP 280
PN P R+ L +C+PR++ RT P
Sbjct: 16 PNPTKPPRL-SLATSICQPRYINRTKPYP 43
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 196 GQPPPFLARLILYSLF 149
G PPPF L+ YSLF
Sbjct: 425 GYPPPFNVLLVCYSLF 440
>03_02_0014 +
4955759-4956106,4956229-4956277,4956372-4956579,
4956700-4956874,4956981-4957046,4957150-4957263,
4957366-4957482,4957589-4957715,4957826-4958112,
4958209-4958399,4958937-4959022,4959117-4959193,
4959330-4959473
Length = 662
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 149 HAHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPV 48
H+H+ H+ + GH V FPPK L +E V
Sbjct: 23 HSHMDGGHHHHHH-GHKVEFPPKKKLIDEFTDAV 55
>01_05_0663 - 24119355-24120101
Length = 248
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 69 AQHALRWE-EDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGG 191
AQ LRW+ +DY E +R +E S ++ R + ++GGG
Sbjct: 194 AQRELRWQLDDY--REQVRRLEASNYALSLHLRQADLRRGGG 233
>12_02_0749 - 22758317-22760407
Length = 696
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 77 VLSEELVAPVGACGFEVGDEV 15
VLS LVA V CG EV +E+
Sbjct: 135 VLSGRLVAEVRGCGCEVSEEL 155
>11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -1
Query: 227 VGVLAVDVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGHVVFFPPKSV 75
+G + D AA L+ Q V + GW H S + +V F P V
Sbjct: 1174 LGAHFTGIRDPRAALLYRQLIDVAWTGSRRGWSHTSRKVIAYVWEFSPSFV 1224
>09_02_0304 + 7118372-7118959
Length = 195
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Frame = +2
Query: 110 RSNQNCGAILRGHEQRIQN*SG*KGRR----LPNHE 205
R C + GHE + SG GRR LP HE
Sbjct: 125 RRGGGCNMVFDGHEMFVDGRSGGGGRRLLGDLPQHE 160
>09_02_0294 - 7032860-7033091,7033471-7033622
Length = 127
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 266 FXPYDAVHKRLERVGVLAVDV 204
F P+ HKR E++G LAV++
Sbjct: 16 FGPFATEHKRHEQIGNLAVEL 36
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 165 FCIRCSCPRRMAPQF*LLRGARSLLPT*ERVERGTCSTCWGVWV*GWRRGTR 10
F + + P R + L G RS+L R+ C T G WRR +
Sbjct: 752 FAVATNVPTRDSTGVSTLAGRRSVLKLAHRMTSSLCRTTGGSCDMAWRRAPK 803
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,494,069
Number of Sequences: 37544
Number of extensions: 194414
Number of successful extensions: 554
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -