Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m16
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.8  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.4  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 109 DEID--SLCFLFSKYFNQSLIVDGKGLTF 189
           DEID  SLC L  K+F  +  V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 398 MCQSCKPANKIQCFECKC-RYLASSLSTLDEGLQNGWDIF 514
           +C+S    +K QC+ C+C R  +   ++L     + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 368 PTPAPDVDEIMCQSCKPANKI 430
           P P P VD   C+SC P+ ++
Sbjct: 582 PVPRPRVDLTQCKSCGPSYRL 602


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 393 SSTSGAGVGL*YVCKYCIMVLNWGTCLMNSS 301
           S+TSGA   L  V K  +M L  G CL+ +S
Sbjct: 537 SATSGAAGDLFSVSKNLMMTLTAGLCLITAS 567


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 247 QQHRQHTQCKKHFFDIFARRV 309
           Q H+ H   K HFF IF +++
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,558
Number of Sequences: 5004
Number of extensions: 66916
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)