Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24m15
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 58 1e-09
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 6e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.004
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.021
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.021
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.028
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.028
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.049
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.049
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.064
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.085
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.15
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.15
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 30 0.26
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.34
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.34
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.34
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 28 1.0
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 28 1.0
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 1.0
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 28 1.0
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 28 1.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.0
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 1.8
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 26 4.2
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 4.2
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 4.2
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 4.2
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.4
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 9.7
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 9.7
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 25 9.7
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 58.0 bits (134), Expect = 1e-09
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Frame = +3
Query: 213 GYENVVVVDGCPQVGPERLEKL-QSVINKIFSKFGKIVNE--YYPTTE-NG--LTTGYIF 374
GY+ VVV++G P V + + + + +K+ +K GK+ Y P E NG ++ G +F
Sbjct: 36 GYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVF 95
Query: 375 LEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQ 554
++ N A V+ + ++ K HTF+V +K P E+ + FK + L+
Sbjct: 96 ADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFS-FEEREFKEREHLR 154
Query: 555 WYLMDPDAYDQFLVGIGTGVALQVW--QNALPEPLL 656
+L D DQF+ G V++ W ++ +PE ++
Sbjct: 155 SWLTDYYGRDQFISYYGNRVSVN-WNRKSDVPEQIV 189
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 288 INKIFSKFGKIVN---EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
+ ++FSKFG+I + YP+TE ++ GY F+ +S+P A +A+ N K+ F+
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTE--ISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENG-LTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
I +IF +G I + + P + L GY ++EY AA AV NN +LD + F+
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.021
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 261 ERLEKLQSVINKIFSKFGKIVNEYYP----TTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
+ E + + FS +G +++ P T +GL TG +F+ YS+ ++A A++
Sbjct: 435 QEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKG 494
Query: 429 CKLD 440
CK +
Sbjct: 495 CKFN 498
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 455
++ I ++++ GK V + G+ GY F+E+++P A+ A+ N H F
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF 165
Query: 456 LVN 464
+N
Sbjct: 166 KLN 168
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.5 bits (73), Expect = 0.028
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
FSKFGK+ PT G G+ F+ + + A EA+ + N ++D
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEID 174
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.028
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 425
+S++ F FG+I++ E + Y F+E+ P++A EA++ N
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.049
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 201 KESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN-GLTTGYIFL 377
K +GY +++V G V PE E+ + +F+ FG + N + G GY +
Sbjct: 5 KSVEGY--IIIVTG---VHPEATEEQ---VEDLFADFGPVKNLHLNLDRRTGYVKGYALI 56
Query: 378 EYSNPQNAAEAVKATNNCKLDKQ 446
EY+ + A +AV N LD++
Sbjct: 57 EYATLEQAQKAVDEKNLSLLDEK 79
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.7 bits (71), Expect = 0.049
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 252 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
VG E + + IF + G + + + E+G GY F EY +P AA AV+ NN
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNN 68
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.064
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 297 IFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
IFS+FGKI++ + E G + Y F+E+ N ++ +A N +D
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.085
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVNE-YYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
+ V+ FS G++V ENG + GY F+ Y + + A A++A NN
Sbjct: 112 ERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 434
+ + + G ++N NGL+ G +EYS + A A+K +N K
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQK 130
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
++ FS FGKI++ E G GY F+ + + ++A A++ N L+ + ++
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/81 (19%), Positives = 38/81 (46%)
Frame = +3
Query: 270 EKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 449
E + + +F +FG+I + +N G+ F+ Y+N + A +AV N+ + +
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 450 TFLVNLFTDFQKYSDIPKEWE 512
++ ++ ++ K +E
Sbjct: 331 LYVGRAQKKHEREEELRKRYE 351
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 494
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 494
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 494
N + K N K DK FL NLFT+F K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 396 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 494
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYP 338
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYP 338
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYP 338
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYP 338
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYP 338
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -2
Query: 170 FFFRNLYEILWVVKIRFFFKVLFLIV 93
FFFRNL++I++V+ + + +F+I+
Sbjct: 1022 FFFRNLFQIVFVLAVICYSSPMFMIL 1047
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 216 YENVVVVDGC--PQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSN 389
++ +V++ C P+ +L+K ++ +NK +F ++ Y TE + + FLEY +
Sbjct: 784 FQTMVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQYASLLHDFLEYQS 843
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 381 YSNPQNAAEAVKATNNCKL--DKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSD 548
Y N + V C++ +K + LF+D ++YS PP P P +V+SD
Sbjct: 190 YKNIKRWMRVVSDRPACRIAAEKVEDNTLTLFSDVERYS------HPPTPPPEQVRSD 241
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 146 ILWVVKIRFFFKVLFLIVTLRSWIRFFIAFFLSHFDDLTCTLPRHAIS 3
+L VV ++F L +L SW F A+F+ F + L H +S
Sbjct: 66 VLGVVSLQFTCAYLLSQSSLLSWKFFLTAYFIGAFCNQNLFLAIHELS 113
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 264 RLEKLQSVINKIFSKFGKIVNEYYP 338
+ K++ +N F++F K N YYP
Sbjct: 71 KTNKIKEFLNDPFTEFSKFHNSYYP 95
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 317 FTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRFLRL 195
F E KY +Y ++ +K + D T V Y VRF RL
Sbjct: 329 FDESEKYLLYGSIVGIKVVSIDNGTVVRIYGKDEAVRFTRL 369
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQ 395
F + G++ + PT + +G GY F+E+ NP+
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK 144
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 372 FLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWE--PPAPQ 527
FL+ SN A+ K+ + K +K+H + LF++ + D W PP P+
Sbjct: 417 FLKKSN----ADTYKSEADKKKEKEHEEIKALFSEVSRTLDSLASWHYVPPPPE 466
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 444 QHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPDAYDQ 587
QH + N+ T Y D+ P AP P V+S + +Y A D+
Sbjct: 577 QHGTVKNMETMHHFYPDVHNSEFPAAPNP--VKSQVPYYYQSQAADDE 622
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 183 ILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINK 296
I++ + K D YE ++V G ++ PE+LE+ + + K
Sbjct: 17 IVDGEEKGID-YERLIVQFGTRKITPEQLERFEKLTGK 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,384
Number of Sequences: 5004
Number of extensions: 57412
Number of successful extensions: 212
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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