Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24m15
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 95 4e-20
AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical... 80 1e-15
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.011
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 35 0.059
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.42
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 32 0.42
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 0.96
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 31 0.96
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical p... 29 2.9
Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical p... 29 2.9
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 3.9
AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf (d... 29 3.9
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 28 5.1
AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical ... 28 5.1
AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical ... 28 5.1
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 28 6.8
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 28 6.8
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 28 6.8
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 6.8
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 28 6.8
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 28 6.8
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 28 6.8
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 28 6.8
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 6.8
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 6.8
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 6.8
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 27 9.0
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 95.1 bits (226), Expect = 4e-20
Identities = 47/142 (33%), Positives = 71/142 (50%)
Frame = +3
Query: 171 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 350
L+ D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P +
Sbjct: 29 LVPDVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPE 88
Query: 351 GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQP 530
G G + E+++ ++A AVK+ N DK HTF F D ++ W P Q
Sbjct: 89 GGCLGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQA 148
Query: 531 FKVQSDLQWYLMDPDAYDQFLV 596
+ DL W+L + DQF +
Sbjct: 149 YNDVGDLWWWLQNERCRDQFAI 170
>AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical
protein Y54E2A.11b protein.
Length = 193
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/119 (33%), Positives = 60/119 (50%)
Frame = +3
Query: 171 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 350
L+ D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P +
Sbjct: 29 LVPDVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPE 88
Query: 351 GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQ 527
G G + E+++ ++A AVK+ N DK HTF F D ++ W P Q
Sbjct: 89 GGCLGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQ 147
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
+ + K+F+KFG I + T E G + G+ F+ ++NP+ A AV+A ++ ++
Sbjct: 226 KETLEKVFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIE 278
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 34.7 bits (76), Expect = 0.059
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 252 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNC 431
VG E +S + + F +GKI E G GY F+EYS+ A K +
Sbjct: 108 VGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGI 167
Query: 432 KLD 440
K+D
Sbjct: 168 KVD 170
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
FS FG I + ENG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
FS FG I++ T + G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 279 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
FS FG I + ENG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
FS FG I++ T + G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 252 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
VG + + I IFSK G +++ + E G GY F+E+ + Q A A++ N
Sbjct: 22 VGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNG 81
Query: 429 CKL 437
+L
Sbjct: 82 YEL 84
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 270 EKLQSVINKIFSKFGKIVNEYYPTTEN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 437
E + ++ FS++GKI N + G GY +EY + A EA+ +N+ L
Sbjct: 65 EATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDL 121
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 276 LQSVINKIFSKFGKIVNEYYPTTE--NGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
L++ + +IFS +G I N P N + GY ++EY N ++A +++K + ++D
Sbjct: 145 LKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQID 201
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 77 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 300 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 458
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 252 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
VG + + + +F K GKI + +G + GY F+ Y N ++AA A K +
Sbjct: 204 VGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDG 263
Query: 429 CKLDKQHTFLVNL 467
++ VN+
Sbjct: 264 HEISTGKPLKVNV 276
>Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical
protein F59A1.11b protein.
Length = 321
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 261 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
+RL +QSVIN I S F IVNE + + G+ F +S+ + +
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVERVIYTISMETFSTSS 126
Query: 441 KQHTFLVNL 467
+ L NL
Sbjct: 127 QDFLMLFNL 135
>Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical
protein F59A1.11a protein.
Length = 303
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 261 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 440
+RL +QSVIN I S F IVNE + + G+ F +S+ + +
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVERVIYTISMETFSTSS 126
Query: 441 KQHTFLVNL 467
+ L NL
Sbjct: 127 QDFLMLFNL 135
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 428
VG + ++ F+KFG++ + + + GY F+ + N QNA A+ N
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNG 198
Query: 429 CKLDKQ 446
+ K+
Sbjct: 199 KWIGKR 204
>AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 3 protein.
Length = 666
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 137 VVKIRFFFKVLFLIVTLRSWIRFF--IAFFLS 48
++KIRFFFK+ F T+ I F + FF+S
Sbjct: 42 ILKIRFFFKIFFADKTMNFLIFIFDALTFFIS 73
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 471 TDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPDAYDQFLVGIGTGVA 617
++ QK SD P PP P P + +L D F+ G G+ A
Sbjct: 629 SELQKISDFPPTPAPPPPYPTPQLAPHDLFLSDDSLVVPFIGGYGSPAA 677
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 471 TDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPDAYDQFLVGIGTGVA 617
++ QK SD P PP P P + +L D F+ G G+ A
Sbjct: 629 SELQKISDFPPTPAPPPPYPTPQLAPHDLFLSDDSLVVPFIGGYGSPAA 677
>AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical
protein Y58G8A.4a protein.
Length = 397
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 434 FTVVRRFHGFGGILWVTVFQENVPSRESILSRGVVFVDYFTEFT 303
F V G GG+LW + + S ++ ++F D FT
Sbjct: 64 FLFVLGIFGNGGVLWAVARNKRLQSARNVFLLNLIFTDLILVFT 107
>AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical
protein Y58G8A.4b protein.
Length = 433
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 434 FTVVRRFHGFGGILWVTVFQENVPSRESILSRGVVFVDYFTEFT 303
F V G GG+LW + + S ++ ++F D FT
Sbjct: 64 FLFVLGIFGNGGVLWAVARNKRLQSARNVFLLNLIFTDLILVFT 107
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1180 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1236
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1180 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1236
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1180 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1236
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1180 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1236
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 446
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 307 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 360
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1057 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1113
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1180 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1236
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1180 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1236
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -3
Query: 652 RGSGNAFCHTWRATPVPMPTRNWSYASGSIKYHCRSDCTLNG*G----AGGSHSFGI 494
RG+ ++ R P P P+ S ++GS R NG G AGG FG+
Sbjct: 1180 RGANSSSTANIRRVPSPTPSSLSSQSAGSADQSSRHRLLFNGTGSISSAGGGSKFGV 1236
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 446
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 307 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 360
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 446
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 282 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 335
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 446
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 285 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 338
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 288 INKIFSKFGKIVNEYYPTTENGLT-TGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVN 464
+ +F FG+IV G G+ +LE++N + +EA+ N L Q +L N
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ--YLRN 280
Query: 465 LFTDFQKY 488
FT F Y
Sbjct: 281 -FTTFGLY 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,871
Number of Sequences: 27780
Number of extensions: 327874
Number of successful extensions: 1062
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -