Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m12
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    30   0.30 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.6  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.6  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    27   2.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   3.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   5.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   6.5  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   8.7  

>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 316 ESNMNTETEPSPKK---KTDKITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRSEKSNA 486
           E+N+  E + S  K   K +KI+ NL  S     I  + +  + PK + V+  + EKS  
Sbjct: 160 ETNLQKEKKESKVKLESKEEKISRNLRSSSRS--ISPVTEQPQSPKIQPVIPEKKEKSEK 217

Query: 487 KNSNM 501
           K S+M
Sbjct: 218 KESSM 222


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 331 TETEPS-PKKKTDKITDNLTVSLEKCDIKKIEKSDEEPK 444
           T  E S PK  +  +T +  V  E  + KK+E SDE PK
Sbjct: 489 TPVEKSFPKPASSPVTFSEDVKKEPSEEKKLEVSDEAPK 527



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +1

Query: 340 EPSPKKKTDKITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRSEKSNAKNSNMKVVSTE 519
           EPS K+  D      TV+  K +   +EKS   PKP       SE    + S  K +   
Sbjct: 465 EPSKKRDEDNHQKEETVTQPKREKTPVEKS--FPKPASSPVTFSEDVKKEPSEEKKLEVS 522

Query: 520 EKQEEFCPRRSSR 558
           ++  +  P   S+
Sbjct: 523 DEAPKAAPLAESK 535


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
 Frame = +1

Query: 343 PSPKKKTDKITDNLTVSLEKCDIKKIEKSD---EE-----PKPRIVLTIRSEKSNAKNSN 498
           P+  KKTD      +++ E+  I+ +E SD   EE      +P ++  +        N+N
Sbjct: 260 PNSNKKTDHAYPGASMNTERGLIQNLEDSDDIHEESSDTLEEPLLINELNRTSFLNSNNN 319

Query: 499 MKVVSTEEKQEEFCPRRSSRTRGK 570
           +K+   EE Q      RS ++ GK
Sbjct: 320 LKLNEAEENQ-NLLNLRSPKSSGK 342


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/84 (19%), Positives = 30/84 (35%)
 Frame = +1

Query: 313 LESNMNTETEPSPKKKTDKITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRSEKSNAKN 492
           + +++N +T P      D  + N   +       K  K DE+  P +   I +       
Sbjct: 1   MSNSLNDQTRPPDSSVVDSTSSNFPNASNDSVHDKPVKQDEQSNPNVREAIANSDGQESL 60

Query: 493 SNMKVVSTEEKQEEFCPRRSSRTR 564
           +  +   TE     F P   S ++
Sbjct: 61  AVKENKDTESSSSHFVPNGVSNSK 84


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/79 (21%), Positives = 36/79 (45%)
 Frame = +1

Query: 319 SNMNTETEPSPKKKTDKITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRSEKSNAKNSN 498
           +  +++T+ SPKK   +     +    K  +KK +KS ++ +        S  S +++S+
Sbjct: 41  AKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSS 100

Query: 499 MKVVSTEEKQEEFCPRRSS 555
            +  S+  + E      SS
Sbjct: 101 SESESSSSESESSSSESSS 119



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +1

Query: 328 NTETEPSPKKKTDKITDNLTVSLEKCDIKKIEKS--DEEPKPRIVLTIRSEKSNAKNSNM 501
           ++E+E     KT++  ++ + S    + ++ E++    E K        SE S++++ + 
Sbjct: 119 SSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESE 178

Query: 502 KVVSTEEKQEEFCPRRSSRTRGKWEWVCDSDTST 603
              S  E++EE   +   +  G  E   DS++S+
Sbjct: 179 SSSSESEEEEEVVEKTEEKKEGSSESSSDSESSS 212


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 173  LSICSLQICKLLDNIIG 123
            LSIC LQICK++D  IG
Sbjct: 1952 LSIC-LQICKIMDGDIG 1967


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 21/91 (23%), Positives = 36/91 (39%)
 Frame = +1

Query: 292 DLDI*TNLESNMNTETEPSPKKKTDKITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRS 471
           D+D  +  E    +  +   KKK  K  D+ + +L+  DI+  EK  ++ K         
Sbjct: 132 DMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKK------SK 185

Query: 472 EKSNAKNSNMKVVSTEEKQEEFCPRRSSRTR 564
           E  +A   + K    EEK  +      S  +
Sbjct: 186 ENDDAPKKDRKTRKKEEKARKLASMLESENK 216


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 343 PSPKKKTDKITDNLTVSLEKCDIKKIEKSDEE--PKPRIVLTIRSEKSNAKNSNMKVVST 516
           P  K  + +   +   S +K  I    ++D+    +PR V+T   E+   K  N+ +   
Sbjct: 417 PMSKNLSMRFVSSFEASTKKESINSHSETDDSILRRPRTVVTFIPERLLCKRFNVALPYG 476

Query: 517 EEKQE 531
           +EKQ+
Sbjct: 477 QEKQK 481


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 209 NNASTVICNRGCRV 250
           +NAST +CN GC V
Sbjct: 875 SNASTFLCNAGCDV 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,744
Number of Sequences: 5004
Number of extensions: 53152
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)