Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m12
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    32   0.41 
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855...    31   0.94 
01_06_0814 - 32171148-32171303,32171383-32171423,32171645-321716...    29   2.9  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    29   3.8  
09_01_0006 - 206409-207464                                             28   6.7  
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    27   8.8  

>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 22/89 (24%), Positives = 46/89 (51%)
 Frame = +1

Query: 334 ETEPSPKKKTDKITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRSEKSNAKNSNMKVVS 513
           ETEP+P +KT K  D      +K   KK ++S+E P        + +K++ ++    V +
Sbjct: 466 ETEPAPAEKTTK-EDGDQEGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEPPVAT 524

Query: 514 TEEKQEEFCPRRSSRTRGKWEWVCDSDTS 600
           TE +++E   ++ S ++   +   +++ S
Sbjct: 525 TEGEKKEKKKKKKSDSQDAEDVAMETEES 553


>03_02_0445 -
           8551912-8552047,8552729-8552896,8553785-8554068,
           8554143-8555386,8556901-8556967,8557059-8557150,
           8557269-8557480,8558541-8558623,8559092-8559122,
           8559770-8559951,8560557-8560616,8561092-8561289,
           8561485-8561539,8562740-8562855,8563012-8563176,
           8563310-8563483,8564134-8564333,8564778-8564882,
           8565063-8565126,8566452-8566718
          Length = 1300

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +1

Query: 418 IEKSDEEPKPRIVLTIRSEKSNAKNSNMKVVSTEEKQEEFCPRRSSRTRGK 570
           ++  D E KP++++ +RSE + A   N ++ S ++    F  R+  +  G+
Sbjct: 188 VDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFFASRKIHKGAGQ 238


>01_06_0814 -
           32171148-32171303,32171383-32171423,32171645-32171690,
           32172100-32172212,32172459-32172552,32172628-32172706,
           32172808-32172899,32172973-32173032,32173263-32173409
          Length = 275

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +1

Query: 286 FFDLDI*TNLESNMNTETEPSPKKKTDKITDNLTVSLEKCDIKK-IEKSDEEPKPRIVLT 462
           +F LD+ T ++  +N E     K+  +K+T+  T  + + + K+   K++ + K   +L 
Sbjct: 39  YFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETEIIRQREAKRGSSKTEAQDKAINLLR 98

Query: 463 IRSEKSNAKNSNMKVVSTEEKQE 531
           +R++   A +S    ++   + E
Sbjct: 99  VRADLQKAVDSENYALAAALRDE 121


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 333  GNRTISKEKDRQNHRQ-PHSLTGKVRHQENRKK*RRTEASN 452
            G+R   K KDR+ HR+  HS + + +  + R K R +++S+
Sbjct: 1138 GDRKHRKRKDRKRHRKHGHSDSDEAKRHKRRSKRRSSDSSD 1178


>09_01_0006 - 206409-207464
          Length = 351

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 511 STEEKQEEFCP-RRSSRTRGKW 573
           +TEE++EE  P R  SR RGKW
Sbjct: 8   TTEEEEEEEGPAREKSRRRGKW 29


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 370 ITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRSEKSNAKNSNMKVVSTEEKQEE 534
           I   ++ S++  + K +     EP P++      E + A+N  MK  +++  QEE
Sbjct: 531 IIPEVSSSIKHKEPKSVVIDQTEPVPKVCTATVVEHNTAENIKMKSTTSKHVQEE 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,203,301
Number of Sequences: 37544
Number of extensions: 297742
Number of successful extensions: 793
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)