Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m12
         (608 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         25   1.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   2.5  

>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 575 SHLPRVLLDLRGQNSSCFSSVDTTFILLFLALDFSERMV 459
           S L  + L L   +SSC  S   +F+ L   +  SER++
Sbjct: 39  SRLCIIALSLTLSSSSCKQSTSLSFVFLCCCVPSSERLI 77


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 400 KCDIKKIEKSDEEPKPRIVLTIRSEKSNAKNSNMKVVSTEE---KQEEFCPRRSSRTRGK 570
           K  I + EK  E+ +PR     R E+  ++  N+K    +E   KQ       S   R K
Sbjct: 334 KITIAEKEKELEQVRPRYEAMRRKEEECSRELNLKEQKRKELYAKQGRGSQFSSKEERDK 393

Query: 571 W 573
           W
Sbjct: 394 W 394


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,821
Number of Sequences: 2352
Number of extensions: 13369
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)