Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m11
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    42   1e-04

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
 Frame = +2

Query: 74  SNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXX----GVRSTRWPTNYWTRVLVPL 241
           SN   K    EL  P+T+T +Q                   G    + P+ Y     +PL
Sbjct: 17  SNTTSKSIFNELRCPVTLTFLQFGFVAFFSAVCLLFRKQFLGGTGIQKPSKYVLYTTLPL 76

Query: 242 AIAKLLTTLCSQVSIWKVPVSYAHTVKATTPLWTAGLARVLF 367
           +I ++   +   ++  K+PVS  HTVKA +PL+T    R +F
Sbjct: 77  SIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMF 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,882
Number of Sequences: 5004
Number of extensions: 34867
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)