Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m11
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   5.8  
Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 213 FVGHRVERTPHRASAGTLSEAAAHSC 136
           FV   VE  PH A+ G+ SE   H C
Sbjct: 146 FVAVGVEEGPHTATTGSDSEGTCHDC 171


>Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical
           protein R74.2 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 213 TIGPVS*YPWRSPNFLPHCARKFPFGKCQSPMPTQ*KRRLLSGRRGW 353
           TI P    P R+P   P+     P G+ Q+P+ T  KR +++ RRG+
Sbjct: 99  TIAPKFDIPTRAPLLNPN-----PIGRNQNPVQTTTKRPVVAYRRGY 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,905
Number of Sequences: 27780
Number of extensions: 209140
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)