Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m11
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 322 FHCVGIGDWHFPNGNLRAQCG 260
           F C G G W+ P+G    + G
Sbjct: 232 FLCKGDGKWYLPSGGCHCKPG 252


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 126 IVSGNGSSVNASL 88
           IV GNG SVN  L
Sbjct: 364 IVQGNGDSVNVQL 376


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 126 IVSGNGSSVNASL 88
           IV GNG SVN  L
Sbjct: 364 IVQGNGDSVNVQL 376


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 290 SKWKLASTVW*EVWRSPRVL 231
           ++W L +T W +VWRS  VL
Sbjct: 110 NRW-LFTTDWCDVWRSLDVL 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,669
Number of Sequences: 438
Number of extensions: 2806
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)