Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m02
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   3.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.8  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 634 TVYRELPRKRTG*CKRSARACPNRP*CVLRS**SRTDNVEHPTEPHRIP 488
           T+Y  +P +    C  + ++CP R   V     +  D  E PT    +P
Sbjct: 340 TMYFRMPHR----CHGNLQSCPTRSHAVWEMVLNELDRREDPTNDEYLP 384


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 373 FHCTLIARKRFRQLGYNAVYSFNDADFDVSDNLLSNYLEEYDEV 504
           FH    +     Q+      S + +DF+   NL ++Y  EY ++
Sbjct: 480 FHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLANDYTPEYYQI 523


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 373 FHCTLIARKRFRQLGYNAVYSFNDADFDVSDNLLSNYLEEYDEV 504
           FH    +     Q+      S + +DF+   NL ++Y  EY ++
Sbjct: 428 FHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLANDYTPEYYQI 471


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 267 GRLRRHLDAPLQHGEREARVGQRRQ 193
           G LR  LD PL   ER +  G +RQ
Sbjct: 133 GVLRSLLDRPLPAPERPSFEGLKRQ 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,940
Number of Sequences: 336
Number of extensions: 2290
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)