Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m02
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    42   9e-05
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   3.6  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    27   3.6  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.6  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   4.7  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   6.2  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   8.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.2  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 5/163 (3%)
 Frame = +1

Query: 100  WVYLANCHLACAWLAGLRLDASR-VHARFRLWLSSLPDARFPLAVLQRSIKMTTEPPQGL 276
            W+++ N HL+  W   L    S  +H   R+   S    + P  +L  S  +        
Sbjct: 3959 WLFINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCISRSIVFNKQTSF 4018

Query: 277  KGNLVRIYANMNEDRFDEATPKYR-RLLFCVSFFHCTLIARKRFRQLGYNAVYSFNDADF 453
            K NL+ +   +         P  R RL F +S+ H TL     F    +     F+D+DF
Sbjct: 4019 KNNLLNLLELL--PTMTHTLPHNRFRLFFFLSWLHATLAEIYCFTCSSWKEPCYFDDSDF 4076

Query: 454  DVSDNLLSNYL---EEYDEVPWDALRYLFAIINYGGHITDDWD 573
                 +L N L      +E  W   + L   + YG  ++   D
Sbjct: 4077 YFGTKILCNILYRNVHLEEFSWGTFKDLLLNVVYGPKVSASSD 4119


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -3

Query: 459  YIKVGIVEAVDGVVAELPEPLPGDQRAVEERDAEQEPPILRRRLVEAILVHVRVYTNQIS 280
            YIK  ++E +      +P  +   +   +E D  + P IL +R ++A  +  R+Y  + S
Sbjct: 1081 YIKASLLEHLGETTDSVPSAIRLCELLEQEYDVSESPVIL-KRFIDAKALLGRLYLAKKS 1139

Query: 279  FK 274
            F+
Sbjct: 1140 FE 1141


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 433 SFNDADFDVSDNLLSNYLEEYDEVPWDALRYLFAIINYGGHITDDWDKRVL 585
           SFN +DF   D +  N+ EE      + L  L AI  YG    DDW++  L
Sbjct: 228 SFNSSDFLCMDAIDFNHDEEKPWSNQETLLLLEAIETYG----DDWNQIAL 274


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 184 RLWLSSLPDARFPLAVLQRSI 246
           R+WL  LPD   P   +QRS+
Sbjct: 246 RMWLEPLPDRSLPALNIQRSL 266


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +1

Query: 121 HLACAWLAGLRLDASRVHARFRLWLSS----LPDARFPLAVLQRSIKMTTEPPQGLKGNL 288
           H+  AWL  +    S+++ +  L L +    L D+      +QR  K  ++  +    N+
Sbjct: 105 HIDGAWLCTIVKRVSKLYVKLSLQLDTSTPTLEDSFDGNGFIQR--KYVSDASR----NV 158

Query: 289 VRIYANMNEDRFDEATPKYRRLLFCVSFFHCTLIAR 396
           +R + ++  DR     P  +  +FC++   C L  R
Sbjct: 159 LRTFNSILSDRQQNINPSKKDAIFCIANLLCLLYFR 194


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 432 VDGVVAELPEPLPGDQRAVEERDAEQEPPILRRRLVEAIL 313
           +D  V  LP PL   Q  ++    E EP  L+RR V+ +L
Sbjct: 256 IDEDVLPLPVPL---QSVMDSEHNENEPRALKRRKVQKLL 292


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 478 NYLEEYDEVPWDALRYLFAIINYGGHITDDWDKR 579
           N L E D  PWD+ +Y+  I +   H + + +KR
Sbjct: 464 NELYESDIKPWDSYKYVRQIESRRIHFSKEEEKR 497


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 377  WKNETQNRSRRYFGVASSK 321
            WKNE     R YF  A SK
Sbjct: 1090 WKNEIVTEKRGYFSTAKSK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,296
Number of Sequences: 5004
Number of extensions: 37980
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)